Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00869
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   3.1  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   5.4  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 234 YFGHCDSAVGVTVHFS-LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTT 410
           YFGH D+ +GV V  + +      H    +R  A  P  ++A  H++   L S  ++Q +
Sbjct: 299 YFGHTDNVLGVVVSENYIISSSRDHTARVWRLDATSP--AEACMHVLRGHLASVNSVQYS 356

Query: 411 LQT 419
            +T
Sbjct: 357 SKT 359


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -1

Query: 548 HIQL*SCAPYLVRLWVQLIDYLDSFKINQHPTTCATRNIFNFIS 417
           H+   S +  L+ ++   +  LD F+IN++    A RN+++ ++
Sbjct: 125 HVNTGSDSELLLNIFAYELQRLDKFRINENDIFEALRNVYDRVN 168


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 342 LVIKLHPDNKHQHVLLLLYEGKNEP*LLQQNHNGQ---NRRLVSHSY*YFIKSIKLL*TV 172
           +VI    DNK  H+L+   +  N P +L  NH+     N  L S     F+K  ++L  V
Sbjct: 182 IVIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKKFLKFDRILADV 241

Query: 171 IC 166
            C
Sbjct: 242 PC 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,366
Number of Sequences: 5004
Number of extensions: 64515
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)