Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00869
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...   108   4e-24
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333...    29   3.3  
11_06_0595 - 25368114-25370051                                         29   4.3  
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197...    29   4.3  
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505     29   4.3  
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    29   4.3  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    29   5.7  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    28   7.5  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score =  108 bits (260), Expect = 4e-24
 Identities = 45/80 (56%), Positives = 63/80 (78%)
 Frame = +2

Query: 512 VLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKDLHEM 691
           V + + N+   YD+T I++K+HHE+NQFCSAH+L +VYIDLFDQIDE ++ A+Q+D    
Sbjct: 227 VHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFDQIDETMKEAIQRDCTRY 286

Query: 692 APGLRVQAVRVTKPKIPESI 751
           APG+ + +VRVTKP IP+SI
Sbjct: 287 APGIEIISVRVTKPNIPDSI 306



 Score = 87.8 bits (208), Expect = 9e-18
 Identities = 40/73 (54%), Positives = 54/73 (73%)
 Frame = +3

Query: 282 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 461
           LH+V EGHVGVY+RGGALL   +  GFH+ +P +T ++ IQ       V+N+PCGT GGV
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGV 209

Query: 462 LIYFERIEVVNKL 500
           +I F++IEVVN+L
Sbjct: 210 MISFDKIEVVNRL 222


>12_02_0723 -
           22532379-22532902,22533060-22533135,22533195-22533380,
           22533459-22534323,22534740-22534918,22535168-22535542
          Length = 734

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 563 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLR 661
           F KV +  N+F + H +H V  D+ DQ+ + L+
Sbjct: 96  FKKVTNLFNKFKTNHQIHGVMKDIMDQVKKELK 128


>11_06_0595 - 25368114-25370051
          Length = 645

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LVQGMGTTELIQFMVHFIENKSPV 548
           + +G GT E+I+F V FIE+  P+
Sbjct: 327 IAKGYGTEEVIEFCVEFIEDLRPI 350


>11_04_0166 +
           14317129-14317962,14318042-14318809,14319008-14319740,
           14353399-14353892,14353971-14354417,14354505-14355110,
           14355204-14355391,14355470-14355640,14355723-14355810
          Length = 1442

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LVQGMGTTELIQFMVHFIENKSPV 548
           + +G GT E+I+F V FIE+  P+
Sbjct: 614 IAKGYGTEEVIEFCVEFIEDLRPI 637


>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
          Length = 772

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LVQGMGTTELIQFMVHFIENKSPV 548
           + +G GT E+I+F V FIE+  P+
Sbjct: 713 IAKGYGTEEVIEFCVEFIEDLRPI 736


>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LVQGMGTTELIQFMVHFIENKSPV 548
           + +G GT E+I+F V FIE+  P+
Sbjct: 675 IAKGYGTEEVIEFCVEFIEDLRPI 698


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 619 LVQGMGTTELIQFMVHFIENKSPV 548
           + +G GT E+I+F + FIE+  P+
Sbjct: 632 IAKGCGTEEVIEFCIEFIEDLRPI 655


>05_04_0186 + 18866762-18866949,18867207-18867345,18868068-18868295,
            18869023-18869081,18869411-18869482,18870239-18870287,
            18870431-18870661,18872018-18872187,18872274-18872478,
            18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 249  DSAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIP 377
            DS V   +HFS+H  E       Y+   +LPV     +  ++P
Sbjct: 931  DSGVSFFLHFSVHTSEPSSSQDVYKDTRILPVHYSDNYFSLVP 973


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,342
Number of Sequences: 37544
Number of extensions: 369972
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)