Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00869
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   4e-11
SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.8  

>SB_27889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/38 (81%), Positives = 34/38 (89%)
 Frame = +2

Query: 638 DQIDENLRTALQKDLHEMAPGLRVQAVRVTKPKIPESI 751
           DQIDENL+TALQ DL +MAPGL V AVRVTKPKIPE+I
Sbjct: 18  DQIDENLKTALQSDLVKMAPGLTVHAVRVTKPKIPETI 55


>SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +3

Query: 285 HKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQT----TLQTDEVKNVPCGTS 452
           H V++GH+ + Y G A L  +    F    P     K I      TL  DE  N  C  S
Sbjct: 187 HMVDKGHMKIDYEGDAALEYSDYYDFSTSYPSDNPDKEIDETASGTLSVDETTNELCLPS 246

Query: 453 G 455
           G
Sbjct: 247 G 247


>SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 318

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 327 GALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNV 437
           GA +P TSQ G ++ + LL+  K  +   Q    KN+
Sbjct: 201 GAWIPSTSQVGEYLQVDLLSVMKINKVATQGQPTKNI 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,346,464
Number of Sequences: 59808
Number of extensions: 456476
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)