Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00869
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   132   2e-31

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  132 bits (320), Expect = 2e-31
 Identities = 60/81 (74%), Positives = 71/81 (87%)
 Frame = +2

Query: 509 SVLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKDLHE 688
           SV  +V+N+T +YDR LIFNKVHHE+NQFCS HTL EVYIDLFD+IDE ++ ALQ+DL +
Sbjct: 97  SVYAIVKNYTVDYDRPLIFNKVHHEVNQFCSVHTLQEVYIDLFDKIDEEIKNALQEDLVK 156

Query: 689 MAPGLRVQAVRVTKPKIPESI 751
           MAPGL VQAVRVTKPKIPE+I
Sbjct: 157 MAPGLYVQAVRVTKPKIPEAI 177



 Score =  122 bits (293), Expect = 4e-28
 Identities = 54/74 (72%), Positives = 62/74 (83%)
 Frame = +3

Query: 279 SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGG 458
           +LHK+EEGHVGVYYRGGALL   +  G+HM IP LT+ K++Q TLQTDE  NVPCGTSGG
Sbjct: 20  ALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTLQTDEATNVPCGTSGG 79

Query: 459 VLIYFERIEVVNKL 500
           VLIYF+RIEVVN L
Sbjct: 80  VLIYFDRIEVVNFL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,551
Number of Sequences: 27780
Number of extensions: 357206
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)