Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00869
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...   111   7e-25
At3g02110.1 68416.m00177 serine carboxypeptidase S10 family prot...    29   4.7  
At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containi...    28   6.3  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score =  111 bits (266), Expect = 7e-25
 Identities = 46/80 (57%), Positives = 62/80 (77%)
 Frame = +2

Query: 512 VLDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRTALQKDLHEM 691
           V D + N+   YD T I++K+HHE+NQFCS+H+L +VYID+FDQIDE ++ ALQ D    
Sbjct: 124 VYDTLLNYGVNYDNTWIYDKIHHEINQFCSSHSLQQVYIDIFDQIDERMKDALQADCTRY 183

Query: 692 APGLRVQAVRVTKPKIPESI 751
           APG+ + +VRVTKPKIPES+
Sbjct: 184 APGIEILSVRVTKPKIPESV 203



 Score =  109 bits (263), Expect = 2e-24
 Identities = 44/73 (60%), Positives = 62/73 (84%)
 Frame = +3

Query: 282 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 461
           +H+V EGHVG Y+RGGALL + ++ GFH+ +P +T+Y+ +Q TLQTD+V+++PCGT GGV
Sbjct: 47  VHQVPEGHVGAYWRGGALLNIITEPGFHLKLPFITNYEPVQVTLQTDQVRDIPCGTKGGV 106

Query: 462 LIYFERIEVVNKL 500
           LI FE+IEVVN+L
Sbjct: 107 LITFEKIEVVNRL 119


>At3g02110.1 68416.m00177 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 (SP:P08818) [Hordeum vulgare]
          Length = 473

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 588 INSVVPIPCTRYTLICLIKSTRI--YGQHCKRIFMKWLQV 701
           ++SVVP+  TRY+L  L  ST++  Y  + K+    W +V
Sbjct: 394 VDSVVPVTATRYSLARLSLSTKLPWYPWYVKKQVGGWTEV 433


>At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 562

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 515 LDMVRNFTAEYDRTLIFNKVHHELNQFCSAHTLHEVYIDLFDQIDENLRT 664
           L+M +++  + D T+  N +   L +  S    HEV++ LFD I  + RT
Sbjct: 227 LEMEKSYGVKTD-TIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDART 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,760,351
Number of Sequences: 28952
Number of extensions: 320379
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)