Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00868
         (785 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   3.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 41  KLKPKFLGPYRIVKVKRKNRYNV 109
           K  P + GPY+I+     N Y +
Sbjct: 423 KFMPLYSGPYKIIAKPHPNTYQI 445


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 82  LYYSIWSQKLWFQFHSCTKL 23
           L Y+ W +K W +F +  KL
Sbjct: 70  LAYNFWKKKYWSEFLANLKL 89


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 516 AVLT*VCPQSYPFITLTSYNIEKVIQKVINHS 421
           A+L  + P+SY   T       KV++K++  S
Sbjct: 50  ALLQEIIPKSYFGTTTNLKRFYKVVEKILTQS 81


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 480 FITLTSYNIEKVIQKVINHS 421
           FI +T+Y  EK+ +  IN++
Sbjct: 175 FIAVTAYQNEKITKLKINYN 194


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,530
Number of Sequences: 336
Number of extensions: 2963
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)