Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00868
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 31 0.19
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 31 0.19
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 31 0.19
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 31 0.19
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 31 0.19
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 31 0.19
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 31 0.19
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 31 0.19
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 31 0.19
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 31 0.19
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 31 0.19
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 7.0
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.3
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 LVAVKRTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 124
LV VKRT+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1197 LVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 86 KRKNRYNVEKADAQVEGPNKTTTSADFMKKWPDYLSD 196
++KN Y ++K AQ + N ++KW D +++
Sbjct: 144 RKKNEYEMKKKGAQSKQTNAPKKGKKQLRKWDDQITE 180
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -3
Query: 468 TSYNIEKVIQKVINHS*TKQLTTITLTSYD*RLNILQQN*LKKNK 334
T+ ++ + I+K++ H +K TLTS + ++ K+NK
Sbjct: 183 TNGDVTRAIEKIVQHGSSKPQKPSTLTSTKSTIKLVSARLKKRNK 227
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 409 LFCLRMIYNFLYNFLYVVRC*CYKRVTLRTD 501
+F + M+Y LY LYV C CYK LR+D
Sbjct: 73 IFIIEMLYYELYLTLYV--CWCYK---LRSD 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,088
Number of Sequences: 5004
Number of extensions: 49009
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -