Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00868
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0300 - 3257584-3258825 31 1.0
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 31 1.0
07_01_1086 - 9930311-9931993 31 1.0
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 31 1.4
10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834 31 1.4
10_02_0198 - 6611775-6612611 31 1.4
05_03_0216 + 10370531-10371922,10378656-10378808 31 1.4
04_01_0187 - 2153546-2154520,2154581-2155858 31 1.4
03_05_0186 + 21731294-21732277 31 1.4
12_02_0637 - 21437244-21438080 30 1.8
08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417 30 1.8
01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399... 30 1.8
10_04_0010 - 7487455-7489490,7489569-7489980 29 3.2
06_02_0319 + 14306464-14306577,14306623-14307117 29 3.2
12_02_0214 + 15750620-15751273 29 4.2
08_01_0749 + 7063297-7064370 29 4.2
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 29 4.2
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 29 4.2
08_02_0235 + 14627648-14628889 29 5.5
11_03_0201 + 11578163-11578915 28 7.3
09_02_0555 - 10588685-10592038 28 7.3
>10_01_0300 - 3257584-3258825
Length = 413
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 26 FGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
F T KL P+F+GPY+IV + + Y +E
Sbjct: 281 FHTNGKLAPRFVGPYKIVSRRGEVAYQLE 309
>08_02_0167 - 13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+++GP+RI+ +R+ Y +E
Sbjct: 1034 RFQTKGKLAPRYVGPFRIIARRREVAYQLE 1063
>07_01_1086 - 9930311-9931993
Length = 560
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 26 FGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
F T KL P+F+GPY+IV+ + + Y +E
Sbjct: 428 FHTKGKLAPRFVGPYKIVRRRGEVAYQLE 456
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 448 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 477
>10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834
Length = 324
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 191 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 220
>10_02_0198 - 6611775-6612611
Length = 278
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 145 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 174
>05_03_0216 + 10370531-10371922,10378656-10378808
Length = 514
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 413 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 442
>04_01_0187 - 2153546-2154520,2154581-2155858
Length = 750
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 663 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 692
>03_05_0186 + 21731294-21732277
Length = 327
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 280 RFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 309
>12_02_0637 - 21437244-21438080
Length = 278
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 145 RFHTMGKLAPRFVGPYKIVSRRGEVAYQLE 174
>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
Length = 447
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+IV + + Y +E
Sbjct: 352 RFHTKGKLAPRFVGPYKIVSRRVEVAYQLE 381
>01_04_0007 -
15038268-15039062,15039177-15039711,15039887-15039936,
15040376-15040446,15040683-15040731
Length = 499
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GPY+I++ + + Y +E
Sbjct: 366 RFQTKGKLAPRFMGPYKILERRGEVAYQLE 395
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GP+RI+ + + Y +E
Sbjct: 727 RFQTKGKLAPRFVGPFRIIARRGEVAYQLE 756
>06_02_0319 + 14306464-14306577,14306623-14307117
Length = 202
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GP+RI+ + + Y +E
Sbjct: 69 RFQTKGKLPPRFVGPFRIIARRGEVAYQLE 98
>12_02_0214 + 15750620-15751273
Length = 217
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GP++IV + + Y +E
Sbjct: 84 RFQTKGKLAPRFVGPFKIVSRRGEVAYQLE 113
>08_01_0749 + 7063297-7064370
Length = 357
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GP++IV + + Y +E
Sbjct: 224 RFQTKGKLAPRFVGPFKIVSRRGEVAYQLE 253
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GP++IV + + Y +E
Sbjct: 1543 RFQTKGKLAPRFVGPFKIVSRRGEVAYQLE 1572
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+F+GP++IV + + Y +E
Sbjct: 699 RFQTKGKLAPRFVGPFKIVSRRGEVAYQLE 728
>08_02_0235 + 14627648-14628889
Length = 413
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 41 KLKPKFLGPYRIVKVKRKNRYNVE 112
KL P+F+GPY+IV + + Y +E
Sbjct: 286 KLAPRFVGPYKIVSRRGEVAYQLE 309
>11_03_0201 + 11578163-11578915
Length = 250
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 41 KLKPKFLGPYRIVKVKRKNRYNVE 112
KL P+F+GPY+I++ + + Y +E
Sbjct: 123 KLAPRFVGPYKILEQRGEVAYQLE 146
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 23 QFGTGMKLKPKFLGPYRIVKVKRKNRYNVE 112
+F T KL P+++GP+RI+ + + Y +E
Sbjct: 984 RFQTKGKLAPRYVGPFRIIARRGEVAYQLE 1013
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,769
Number of Sequences: 37544
Number of extensions: 259815
Number of successful extensions: 544
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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