Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00868
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/67 (19%), Positives = 28/67 (41%)
 Frame = -3

Query: 594 RYTAAFTNINLHPSYHAFNKTSFPHSAVLT*VCPQSYPFITLTSYNIEKVIQKVINHS*T 415
           +Y +  ++I   PS   + +  FP+      + PQ    ++  + N  +  Q + N    
Sbjct: 441 QYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYHEEFQSLNNAVGE 500

Query: 414 KQLTTIT 394
            + T +T
Sbjct: 501 MEATNVT 507


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 163 ISRCSSLVRAFNLCVSLLNIVSILSFDLYYSIWSQKL---WFQFH 38
           I  CSS    ++LC+ LL + +++   +  S ++  L   W  F+
Sbjct: 81  IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFN 125



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 774 FNIYWDAGFRQLIKVSRLLLPRFIS 700
           F  YWD     L+  + ++LP  IS
Sbjct: 87  FRFYWDLCMLLLLVANLIILPVAIS 111


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 163 ISRCSSLVRAFNLCVSLLNIVSILSFDLYYSIWSQKL---WFQFH 38
           I  CSS    ++LC+ LL + +++   +  S ++  L   W  F+
Sbjct: 81  IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFN 125



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 774 FNIYWDAGFRQLIKVSRLLLPRFIS 700
           F  YWD     L+  + ++LP  IS
Sbjct: 87  FRFYWDLCMLLLLVANLIILPVAIS 111


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 163 ISRCSSLVRAFNLCVSLLNIVSILSFDLYYSIWSQKL---WFQFH 38
           I  CSS    ++LC+ LL + +++   +  S ++  L   W  F+
Sbjct: 81  IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFN 125



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 774 FNIYWDAGFRQLIKVSRLLLPRFIS 700
           F  YWD     L+  + ++LP  IS
Sbjct: 87  FRFYWDLCMLLLLVANLIILPVAIS 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,780
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)