Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00867
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 476 HLPSGCRRRWISPRRYHP 423
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +1

Query: 505 LFQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIE 633
           +F   +     D   N+RA  +LRT  E  + T+   +   I+
Sbjct: 377 IFSPHEENESVDKHPNRRARGQLRTKIESGEGTIPVKSSEGIQ 419


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 494 MVNHFSRSSRGNTKRTSL 547
           M +H+ R++ GN +R  L
Sbjct: 241 MFSHYDRNNNGNLEREEL 258



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +2

Query: 230 VLQ*LSKTTTKDAGTI-SGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDV 406
           V+Q +S    K A  + + LN+  I   P+     Y +      + N+L  DL  G  ++
Sbjct: 768 VVQEISSDGLKFAFDVKTTLNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEM 827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,875
Number of Sequences: 438
Number of extensions: 4796
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)