Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00865
         (756 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E24BA3 Cluster: PREDICTED: similar to Chain A, A...    35   2.5  
UniRef50_Q9VSH4 Cluster: CG7185-PA; n=4; Endopterygota|Rep: CG71...    34   3.3  
UniRef50_Q8VJB2 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_UPI00015B5E0C Cluster: PREDICTED: similar to ENSANGP000...    33   7.6  

>UniRef50_UPI0000E24BA3 Cluster: PREDICTED: similar to Chain A,
           Alternative Splicing Of Rac1 Generates Rac1b, A Self-
           Activating Gtpase; n=1; Pan troglodytes|Rep: PREDICTED:
           similar to Chain A, Alternative Splicing Of Rac1
           Generates Rac1b, A Self- Activating Gtpase - Pan
           troglodytes
          Length = 280

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 141 GRTSYDAPRSGSAPASWTAAAPHGPTPGRAASHAT 245
           G T ++AP  GS PA  + + P G TPGR  + A+
Sbjct: 34  GGTPWEAPGKGSLPAPSSRSTPRGSTPGRGPAGAS 68


>UniRef50_Q9VSH4 Cluster: CG7185-PA; n=4; Endopterygota|Rep:
           CG7185-PA - Drosophila melanogaster (Fruit fly)
          Length = 652

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +1

Query: 538 GAPAPHVNPAFFN 576
           GAPAPHVNPAFFN
Sbjct: 356 GAPAPHVNPAFFN 368


>UniRef50_Q8VJB2 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium tuberculosis|Rep: Putative uncharacterized
           protein - Mycobacterium tuberculosis
          Length = 206

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 129 RSRWGRTSYDAPRSGSAPA-SWTAAAPHGPTPGRAASHA 242
           RSRW  T  D P  G  PA SW  A P GP    A   A
Sbjct: 41  RSRWAPTPADRPGPGRLPARSWCVAHPGGPVKPPAVPRA 79


>UniRef50_UPI00015B5E0C Cluster: PREDICTED: similar to
           ENSANGP00000003404; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000003404 - Nasonia
           vitripennis
          Length = 708

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 535 PGAPAPHVNPAFF 573
           PG PAPHVNPAFF
Sbjct: 366 PGGPAPHVNPAFF 378


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.131    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,319,076
Number of Sequences: 1657284
Number of extensions: 7823555
Number of successful extensions: 35822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35801
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)