Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00865
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758     29   3.0  
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891...    29   4.0  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    29   5.3  
08_02_1040 - 23873354-23874509,23875645-23875796                       29   5.3  
05_01_0170 + 1180168-1180367,1181538-1181598,1181657-1181659,118...    29   5.3  
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718...    28   7.0  
11_06_0690 + 26303733-26306540                                         28   9.2  
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968...    28   9.2  

>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
          Length = 223

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 129 RSRWGRTS-YDAPRSGSAPASWTAAAPHGPTPGRAASHATS 248
           RSR  R S   +PR+G+A     A AP GP P  A++  +S
Sbjct: 78  RSRSSRRSPLASPRTGTASPLSAAVAPGGPAPSPASAAVSS 118


>02_05_0329 -
           27986261-27987372,27988632-27988638,27988999-27989128,
           27989157-27989216,27989318-27989970,27990056-27990526
          Length = 810

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 160 ASYEVRPHLDRSVPHQKTLRDEDQAARL--DGVLSFQDCWDQEASTW 26
           A   +R +LD   P   T+   D+A  L  DGV  +   WD  A  W
Sbjct: 640 AFVSLRHYLDEIKPEGSTMTPFDEAFELLCDGVSPYGPMWDHAAEYW 686


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 717 TVRLSRPGWRPLCWRWCSMGWMTVRS 640
           + R+ RP + PL +RWC + W TV S
Sbjct: 410 STRVIRPFF-PLIFRWCRINWQTVWS 434


>08_02_1040 - 23873354-23874509,23875645-23875796
          Length = 435

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 135 RWGRTSYDAPRSGSAPASWTAAAPHGPTPGRAASHATS 248
           RW R+S  A R  S+ A+  AAA   P+P  A+S  TS
Sbjct: 323 RWVRSS-TALRGNSSDAAAAAAAAAAPSPSSASSTPTS 359


>05_01_0170 +
           1180168-1180367,1181538-1181598,1181657-1181659,
           1182396-1182443,1182979-1184595
          Length = 642

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 135 WTVRSPTKKLSGMRTRRPAWMGSSHSRI 52
           W  R PT+  SG  T+RP+ +    SR+
Sbjct: 90  WAFRCPTEGFSGNTTKRPSRLSELESRV 117


>02_05_0831 -
           32071280-32071403,32071528-32071706,32071786-32071893,
           32071987-32072109,32072480-32072608,32072998-32073281,
           32073783-32074094,32074208-32074340
          Length = 463

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 458 PVRRVEDEVVASDAAFHDAGVHNEARAE 375
           PV RV DEV AS A+  D+G  +E  AE
Sbjct: 61  PVMRVLDEVKASSASDSDSGGRSEEDAE 88


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 APRSGSAPASWTAAAPHGPTPGRAASHAT 245
           A  S ++P SW  A P G T   AAS A+
Sbjct: 776 AETSAASPVSWPTAGPPGVTSSTAASVAS 804


>07_03_0196 +
           14995224-14995489,14995859-14995877,14996703-14996839,
           14998365-14998457,15001597-15001932,15003035-15003503
          Length = 439

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 747 RLRRIALW-WPTVRLSRPGWRPLCWRWCSMG 658
           R + I LW WPT+  S PG    C RW   G
Sbjct: 132 RNKEIFLWRWPTLG-SNPGSATACGRWLGAG 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,060
Number of Sequences: 37544
Number of extensions: 246440
Number of successful extensions: 1184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)