Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00865
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54853| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)                 30   1.8  
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)                  29   4.1  
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)                       28   9.4  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 28   9.4  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_54853| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)
          Length = 200

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 226 RPGVGPCGAAAVHEAGADPDLGASYEVRPHLDRSVPHQKTLRDEDQAAR 80
           RPG         HE  A          R +++R+ P +K L DE  AAR
Sbjct: 33  RPGYATIEVDLKHEKAAGDRESVKVAERSYIERTAPKKKELTDEQLAAR 81


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 108 VFWWGTERSRWGRTSYDAPRSGSAPASWTAAA 203
           V++W  E  +W   SYD+P +G AP++  + A
Sbjct: 408 VWYWMDENGKW--QSYDSPENGKAPSTTCSKA 437


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 720 PTVRLSRPGWRPLCWRW 670
           PT  LSR  W PL W W
Sbjct: 240 PTNELSRDSWHPLSWSW 256


>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
          Length = 1115

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 114 WWGTERSRWGRTSYDAPRSGSAPASWTAAAPHGPTPGRAAS 236
           W  T  S+ G T+     SG  PA   A   H PTPG+  S
Sbjct: 209 WDETPASQMGGTTPMIGTSGVTPAGALAMQMHTPTPGQLVS 249


>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 148 VRPHLDRSV----PHQKTLRDEDQAARLDGVLSFQDCWDQEAST 29
           VRP L+ +     PHQ+ L D  +A +       + CWD+E  T
Sbjct: 520 VRPQLEYASTVWSPHQEYLIDAIEAVQKKAARFCKQCWDREPGT 563


>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
          Length = 244

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 148 VRPHLDRSV----PHQKTLRDEDQAARLDGVLSFQDCWDQEAST 29
           VRP L+ +     PHQ+ L D  +A +       + CWD+E  T
Sbjct: 102 VRPQLEYASTVWSPHQEYLIDAIEAVQKKAARFCKQCWDREPGT 145


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 117 WGTERSRWGRTS---YDAPRSGSAPASWTAA-APHGPTPG 224
           W    SRW R      D+PR+ +   SW+AA  P G T G
Sbjct: 510 WMQTPSRWARRGDSLRDSPRTETPGESWSAAYVPDGTTGG 549


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 148 VRPHLDRSV----PHQKTLRDEDQAARLDGVLSFQDCWDQEAST 29
           VRP L+ +     PHQ+ L D  +A +       + CWD+E  T
Sbjct: 588 VRPQLEYASTVWSPHQEYLIDAIEAVQKKAARFCKQCWDREPGT 631


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,897
Number of Sequences: 59808
Number of extensions: 232238
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)