Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00865
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 626 HPVQVLRTVIQPMEHHLQHKGLH 694
           HP Q+++    P +HH+Q++G+H
Sbjct: 434 HPHQMMQQQQHPQQHHMQYQGMH 456


>Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical
           protein F13D12.3 protein.
          Length = 245

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 712 YGRPPQSYPPQADPA 756
           YGRPPQ YP Q  PA
Sbjct: 115 YGRPPQFYPAQPGPA 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.131    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,800
Number of Sequences: 27780
Number of extensions: 157182
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)