Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00865
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33680.1 68414.m04166 KH domain-containing protein similar to...    28   7.7  

>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 223 PGVGPCGAAAVHEAGADPDLGASYEVRPHLDRSVPHQ 113
           PG  P   A+  +AGA    G  Y+ +PH D    HQ
Sbjct: 486 PGPVPSHGASYSQAGAQQTYGQMYD-QPHYDNPPMHQ 521


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,144
Number of Sequences: 28952
Number of extensions: 154788
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)