Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00864
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40280.1 68415.m04958 dehydration-responsive family protein s...    28   5.8  
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless...    28   7.7  
At5g47490.1 68418.m05864 expressed protein                             28   7.7  
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c...    28   7.7  

>At2g40280.1 68415.m04958 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 589

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 662 RHIPHRERHVPAQYWKCTRP 603
           RH+ HRERH P    KC  P
Sbjct: 108 RHMEHRERHCPEPSPKCLLP 127


>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
           protein, putative similar to notchless [Xenopus laevis]
           GI:3687833; contains Pfam PF00400: WD domain, G-beta
           repeat (8 copies)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 1   ARRAQPADCRSSAPNKPFLCFKSLQALSRDW*LYPETKIWTAPGH 135
           A  A+   C S +P+   L   S     R W LY ET ++T  GH
Sbjct: 106 AGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGH 150


>At5g47490.1 68418.m05864 expressed protein
          Length = 1361

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 310  KLTVAHR--QARLQFARTNLN*EVEQWRQIQFSDESRMCLH 426
            KL+ A +  QA L+  +T  + EVE W+Q   S E R+ +H
Sbjct: 915  KLSTAQKYCQAVLKCLKTGRSPEVEMWKQFVSSLEERIRIH 955


>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 170

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = -1

Query: 504 SHCFSETALRK----SLPRPPVDPTSSVATMQTHPALVGELDLPPLL-NLSIKIGTSKLK 340
           S+C+ +  L++    S  +  V+ + SV+   +  + +    +PPLL N S+K+   + K
Sbjct: 33  SNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKK 92

Query: 339 ACLSMSYREFRACDRP 292
           A +S+   E     RP
Sbjct: 93  AVISLPTTEQNQQQRP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,323,679
Number of Sequences: 28952
Number of extensions: 388963
Number of successful extensions: 1149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)