Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00863
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1204 + 35402747-35404705                                         31   0.44 
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686...    27   9.5  
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524...    27   9.5  

>01_06_1204 + 35402747-35404705
          Length = 652

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 284 SVRAKSTLGGIRPFYVRTCEVCVVQSWWFVQYQSIHADVMRQITSWTTSGF 436
           S+ AK+ L  +R F     E+C +QS W +  + +  DV   IT    S +
Sbjct: 563 SLPAKALLQKLRMFNGYLEEICAIQSEWVIADEQLREDVRAAITDSVKSAY 613


>09_06_0235 -
           21763470-21764511,21767865-21768261,21768625-21768632,
           21769489-21769565
          Length = 507

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 321 HFMFELAKSVLFKAGGSSSTSLFTQTSCAR*HHGP 425
           H M   + S +F++ GSSS+S +     A  HH P
Sbjct: 241 HLMASSSGSSMFRSQGSSSSSFYLANGAA--HHAP 273


>01_01_0682 -
           5244805-5244919,5246468-5246613,5246813-5246994,
           5247069-5247295,5247382-5247467,5247564-5247656,
           5247964-5248118,5248407-5248490,5248589-5248768,
           5249587-5249828,5249927-5249982
          Length = 521

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 498 LRSRSLVGLVRIGLTETPPYVNPDVVH 418
           LR R L+G+   G  +T  Y+ P +VH
Sbjct: 126 LRGRDLIGIAETGSGKTLAYLLPAIVH 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,722
Number of Sequences: 37544
Number of extensions: 204640
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)