Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00863
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               95   2e-20
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   1.4  
SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)                      28   5.5  
SB_30587| Best HMM Match : IncA (HMM E-Value=0.42)                     27   7.3  
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                27   9.6  
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      27   9.6  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 48/93 (51%), Positives = 60/93 (64%)
 Frame = +3

Query: 231  SRSHHQIDDSRYKGKRQYPFVPNQPSEASAHFMFELAKSVLFKAGGSSSTSLFTQTSCAR 410
            +R H      + KGK+      N  +EA AHFMFELAK+VL KAGG S+ S+F Q S + 
Sbjct: 1302 NRRHRNRPQRKKKGKKA---AMNHATEAEAHFMFELAKTVLTKAGGGSTASVFNQASSSA 1358

Query: 411  *HHGPHRGLHMVAFQLGLYALGLLNCVIANWLS 509
             H GPHRGL + AF++GL+ALGL N    NWLS
Sbjct: 1359 SHVGPHRGLQLCAFEIGLFALGLHNRTSPNWLS 1391


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 416 SWTTSGFTYGGVSVRPIRTRPTKLRDR-KLAQRTYSSHVS 532
           S  T  FT+ G S +P+ T PT L D+ KL   + +S VS
Sbjct: 820 STPTPFFTHPGFSTKPVTTSPTSLSDQLKLFASSSTSSVS 859


>SB_21656| Best HMM Match : C2 (HMM E-Value=0.019)
          Length = 792

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 395 DVMRQITSWTTSGFTYGGVSVRPIRTRPTKLR 490
           DV +   +WTTS   +G   V P+   PT L+
Sbjct: 323 DVTKSAVTWTTSNPRFGFKQVAPVLLTPTLLQ 354


>SB_30587| Best HMM Match : IncA (HMM E-Value=0.42)
          Length = 272

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 103 FAVRESCGARGSLFAARGSCAPRETNEVC 17
           F  RESCGA+G + +   +C+P+E    C
Sbjct: 222 FDHRESCGAKG-IRSTGSNCSPQEPRPSC 249


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 42  AHDPRAANNDPRAPHDSR 95
           AH+PR    DPR P D R
Sbjct: 392 AHNPRPGPQDPRGPQDRR 409


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 382 LVLDEPPALNNTDFASS 332
           LVLDEPP+L+N +F  S
Sbjct: 562 LVLDEPPSLSNPEFKVS 578


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 36  RGAHDPRAANNDPRAPHDSRT 98
           R  +DPR   NDPR P+D RT
Sbjct: 702 RTRNDPRT-RNDPRTPNDPRT 721


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/80 (22%), Positives = 32/80 (40%)
 Frame = +3

Query: 177 YAQSAQFAHXTRTATHVVSRSHHQIDDSRYKGKRQYPFVPNQPSEASAHFMFELAKSVLF 356
           YA+S  + H T +  HV S SH  +  S       Y  V    + A++ +    +     
Sbjct: 48  YARSLCYTHVTTSYAHVTS-SHAHVTSSHAHVTSSYTHVTTSYAHATSSYAHATSSFAHV 106

Query: 357 KAGGSSSTSLFTQTSCAR*H 416
            +  + +TS F   + +  H
Sbjct: 107 TSSYAHATSSFAHVTSSYAH 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,051
Number of Sequences: 59808
Number of extensions: 241980
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)