Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00863
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = +3

Query: 213  TATHVVSRSHHQIDDSRYKGKRQYPF-VPNQPSEASAHFMFELAKSVLFKAGGSSSTSLF 389
            T +    +S+  +   R +  R   F   N  S+A  + M EL+K +LF+AGGS +  ++
Sbjct: 1130 TDSSATKKSNSIVRKPRRRTNRSLSFDTGNTVSDAHVYHMNELSKKILFEAGGSLNNVIW 1189

Query: 390  TQTSCAR*HHGPHRGLHMVAFQLGLYALGLLNCVIANW 503
                      G +R LH+ A  +  YALG+ N +  NW
Sbjct: 1190 GNPVTG----GTNRRLHLCAIAIACYALGMSNRISPNW 1223


>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 406 AHDVCVNRLVLDEPPALNNTDFASSNIKWAD 314
           AHD C+      +PPA ++ D +SSN +W +
Sbjct: 772 AHDECIFEHNRLKPPACSSIDSSSSNAEWVE 802


>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 406 AHDVCVNRLVLDEPPALNNTDFASSNIKWAD 314
           AHD C+      +PPA ++ D +SSN +W +
Sbjct: 772 AHDECIFEHNRLKPPACSSIDSSSSNAEWVE 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,636,820
Number of Sequences: 27780
Number of extensions: 163374
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)