Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00863
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 277 VNIRSCQINPRRHPPILCSN 336
           V +R C   PRRH P+  SN
Sbjct: 105 VCMRKC---PRRHRPVCASN 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 177 YAQSAQFAHXTRTATHVVSRSHHQIDDSRYKGKRQYPF 290
           Y+ +   +   R++   +SR+ ++ + S Y G+R   F
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTF 54


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 177 YAQSAQFAHXTRTATHVVSRSHHQIDDSRYKGKRQYPF 290
           Y+ +   +   R++   +SR+ ++ + S Y G+R   F
Sbjct: 17  YSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTF 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,499
Number of Sequences: 438
Number of extensions: 2124
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)