Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00863
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    29   2.6  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    27   5.9  

>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 198 AHXTRTATHVVSRSHHQIDDSRYKGKRQYPFVPNQ-PSEASAHFMFELAKSVLFKAGGSS 374
           +H T++  HV + S       RY    + P +P Q  SE    F+  L K V+ K G S 
Sbjct: 280 SHDTKSKRHVATPSMTMAPYQRYPRPVRQPLIPPQHESEKEEGFLGSLGKLVV-KTGSSV 338

Query: 375 S 377
           S
Sbjct: 339 S 339


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 366 GSSSTSLFTQTSCAR*HHGPHRGLHMVAFQLGLYALGLLN 485
           G+SS+   + +SC +  +G H  L ++   L L  LGLLN
Sbjct: 656 GTSSSPSSSSSSCYKHINGFHGSLVVLFVSLSLILLGLLN 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,182,523
Number of Sequences: 28952
Number of extensions: 154319
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)