Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00862
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.89 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.3  
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...    25   8.3  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 552  LARVRPP-PADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
            +A VR P P  S   PA   R S     PPPP  TA+  A  P
Sbjct: 880  MAPVRSPFPGASSAQPAAMSRTSSVSTLPPPP-PTASMTASAP 921


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPPL 680
           PPP+  V   A+    ++ +R PPPP  +      PP+
Sbjct: 293 PPPSSRVSAAALA---ANKKRPPPPPPPSRRNRGKPPI 327


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 627 RSPPPPVATATRDAGPPLRCYCW 695
           R  PP + T+T   G PL C  W
Sbjct: 502 RFTPPGILTSTISLGQPLTCQGW 524


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 243  LILQSHRLINEVLNISEGLTH 181
            LI ++HRLIN++L+  E + H
Sbjct: 1395 LISETHRLINDILDALEVIGH 1415


>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 628 GARRHQS-LQRRATRARRSGAIVGAD 702
           GAR H +  Q +   ARR+GAIVG +
Sbjct: 17  GARTHVAKTQSQINSARRAGAIVGTE 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,587
Number of Sequences: 5004
Number of extensions: 45231
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)