Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00862
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 33 0.23
03_02_0930 - 12480983-12481888 33 0.23
02_02_0240 + 8196140-8198248,8198381-8198650 33 0.31
12_01_0382 + 2995263-2995673 32 0.40
11_01_0066 - 536281-537196,537397-537452 31 0.70
12_01_0843 + 7891622-7892524 31 0.93
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 31 0.93
06_03_0395 - 20354713-20355570 31 1.2
03_05_0933 + 28933139-28933531 31 1.2
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 30 1.6
09_04_0109 - 14674980-14675004,14675861-14676468 30 2.2
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 29 3.8
01_01_0595 - 4430738-4430785,4430904-4432679 29 3.8
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 29 5.0
08_01_0386 + 3424561-3425346 29 5.0
06_01_0769 - 5745324-5746970 29 5.0
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728 29 5.0
02_01_0569 - 4190114-4190497 29 5.0
10_08_0496 - 18328875-18328907,18329056-18329106,18329562-183296... 28 6.6
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570 28 6.6
05_04_0144 + 18389877-18390431 28 6.6
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412 28 6.6
02_01_0339 - 2412243-2413337 28 6.6
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 28 6.6
12_01_0616 - 5076126-5076371,5077386-5077613,5079356-5079859 28 8.7
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 28 8.7
07_03_1636 + 28290642-28291574 28 8.7
03_03_0225 - 15587557-15588774 28 8.7
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601... 28 8.7
02_03_0039 - 14228876-14228878,14229578-14229727,14230457-142306... 28 8.7
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +3
Query: 555 ARVRPPPADSVVLPAVTGRCS--DARRSPPPPVATA----TRDAGPPLRCYCWSGR 704
AR PPP +V +PAV S A + PPP A A RD G L GR
Sbjct: 117 ARSTPPPTPAVQIPAVASSSSAQPAAAAQPPPAAAAVSALARDVGRQLAVVAGGGR 172
>03_02_0930 - 12480983-12481888
Length = 301
Score = 33.1 bits (72), Expect = 0.23
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +3
Query: 540 HSFKLARVRPPPADSVVLPAVTGRCSDARRSPP-----PPVATATRDAGPPLRCYCWSGR 704
H KL R R + PA T R SDA PP PP A A P CYC +
Sbjct: 14 HKLKLRRRRKKKSKRAS-PASTARPSDASAVPPAAPRQPPAAAAPAGGLSPCCCYCPNRE 72
Query: 705 RRYIFTA 725
Y+ +A
Sbjct: 73 SYYLNSA 79
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
PPPADS P V G + A S P V T+ PP
Sbjct: 132 PPPADSAAAPTVDGEAAKADHSAPFRVPPPTKVLVPP 168
>12_01_0382 + 2995263-2995673
Length = 136
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 543 SFKLARVRPPPADSVVLPAVTGRCSDARRSPPPPVA 650
SF A +PPP +V+ + G C SPPPP +
Sbjct: 29 SFNGAAAQPPPDTNVLCVSKCGTCPTVCSSPPPPAS 64
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 567 PPPADSVVLPAVTGRCSDARRSP-PPPVATATRDAGPPL 680
PPP + P + + R SP PPP+ TAT PPL
Sbjct: 230 PPPPSTATPPPPSPTPTTTRASPTPPPIPTATVRPPPPL 268
>12_01_0843 + 7891622-7892524
Length = 300
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATA 656
PPP S +LP + R D + PPPVA A
Sbjct: 115 PPPPPSAMLPLLPVRPLDTTTTTPPPVAPA 144
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 31.1 bits (67), Expect = 0.93
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 725 SSKY--IAAASAPTIAPERRARVARRCSDWWRRAPSRVATATGDGG 594
SSK+ AAA+AP AP R RR RR P + A+ +G GG
Sbjct: 2 SSKHRSAAAAAAPAAAPPSAVRTPRRL----RRRPLKTASGSGGGG 43
>06_03_0395 - 20354713-20355570
Length = 285
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 558 RVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPPLRCYC 692
R +PPP + L A C R P VATAT L C C
Sbjct: 124 RRQPPPPTAPPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCCC 168
>03_05_0933 + 28933139-28933531
Length = 130
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 659 RRCSDWWRRAPSRVATATG---DGGQHYTIGRRWSD 561
RR + WWR+ P+ + A DGG+ Y GRR +D
Sbjct: 17 RRGAQWWRQPPAILPPALDPPTDGGEMYGPGRRKAD 52
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 555 ARVRPPPADSVVLPAVTGR-CSDARRSPPPPVATATRDAGPPLRCYCW 695
A P P S +LP GR + + SPPPP A A PP W
Sbjct: 48 AHPHPHPHLSKILPFRRGRPLARSYDSPPPPAAAAAAPPPPPAWRLAW 95
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 555 ARVRPPPADSVVLPAVTGRCSDARRSPPPPVATA--TRDAGPP 677
A V PPP ++LP GRC PPP VA + R PP
Sbjct: 46 AAVSPPPRHRLLLPPPPGRC---LLHPPPTVAASFTHRPRSPP 85
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 564 RPPPADSVVLPAVTGRCSDARRSPPPPVATATR 662
RPPPA+ A+ R A P PP A A R
Sbjct: 164 RPPPAEPAEPTAIAPRPPPAESVPKPPPAVAAR 196
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 537 RHSFK-LARVRPPPADSVVLPAVTGRCSDARRSPPPPVATA 656
R FK L PPP D+ V P++ + S R+PP P TA
Sbjct: 195 RVPFKDLVNTLPPPRDAAVSPSIPAKKS--ARAPPSPKDTA 233
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 543 SFKLARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
S K + +PPP + +P V R R PP +++ A PP
Sbjct: 46 SSKRPKKQPPPPRATPIPVVLRRSLRTRGLPPSTSTSSSSAASPP 90
>08_01_0386 + 3424561-3425346
Length = 261
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 591 LPAVTGRCSDARRSPPPPVA-TATRDAGPPLRCYCW 695
LPA A R PPPP A A AGPP CW
Sbjct: 229 LPAARSASVSAARCPPPPAALLAPALAGPP---PCW 261
>06_01_0769 - 5745324-5746970
Length = 548
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 588 VLPAVTGRCSDAR-RSPPPPVATATR 662
+LP VT A R PPPP ATAT+
Sbjct: 372 LLPQVTSTSESAGGRPPPPPTATATK 397
>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
Length = 463
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 552 LARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
L R R PPA S P V + + A +P PP A + A PP
Sbjct: 214 LVRARDPPAPSH--PHVEYQPAPAMLAPEPPQALTAKPAPPP 253
>02_01_0569 - 4190114-4190497
Length = 127
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 570 PPADSVVLPAVTGRCSDARRSPPPPVATATR-DAGPPLRCYCWSGRRR 710
P A + VL A + C A R PP P A + DA CYC GRRR
Sbjct: 38 PTAAASVLRAPSV-CPPAPRKPPRPAAKRRKKDARFSRSCYC-CGRRR 83
>10_08_0496 -
18328875-18328907,18329056-18329106,18329562-18329690,
18330491-18330524,18331252-18331280,18331801-18332945,
18333003-18333353,18334617-18334893
Length = 682
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 595 PPSPVAVATRDG-ARRHQSLQRRATRARRSG 684
PP P A A G ARR +L R TRAR G
Sbjct: 210 PPPPAAAAAAAGMARRVTTLTRARTRARGGG 240
>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
Length = 508
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 576 ADSVVLPAVTGRCSDARRSPPPPVATATRD 665
A +VV+ TGR + RSPPPP + D
Sbjct: 94 AHNVVVNPATGRWARLPRSPPPPPGCSCND 123
>05_04_0144 + 18389877-18390431
Length = 184
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 677 RRARVARRCSDWWRRAPSRVATATGDGGQ 591
RRA VA RC R P+R A G GG+
Sbjct: 4 RRAEVAARCDGSGGRRPARPARRHGGGGR 32
>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
Length = 184
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +3
Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPPLRCYCWS 698
PPP P C D PPPP A A P C WS
Sbjct: 116 PPPCGGCATP----HCCDCHPKPPPP---APAPAKPACGCPAWS 152
>02_01_0339 - 2412243-2413337
Length = 364
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 595 PPSPVAVATRDGARRHQSLQRRATRARRSGAIVGADAAA 711
PP P V +G R S + R RRSG + AD A
Sbjct: 124 PPHPDKVGGGEGRRPEYSFEALVHRERRSGWMTNADEEA 162
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 549 KLARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
KL + PPP + +V GR + PPPP A T A P
Sbjct: 268 KLPPIPPPPPMPAL--SVCGRAAAPPPPPPPPPARRTSGAASP 308
>12_01_0616 - 5076126-5076371,5077386-5077613,5079356-5079859
Length = 325
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 522 KSSLDRHSFKLARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPPL 680
K + S K PP ++VLPA C+D + P A R P L
Sbjct: 50 KKKVHMESEKQQLPPPPSPPALVLPAFKRNCTDQEQRAPATSTKAARGRPPRL 102
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 525 SSLDRHSFKLARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGP 674
SS D + AR+RP +LP RC+ +RR PPP A D P
Sbjct: 130 SSRDLLRSRSARMRP------ILPPNIPRCA-SRRQPPPQCPAAAADDAP 172
>07_03_1636 + 28290642-28291574
Length = 310
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
PPP D+ + A+ SPPPP T T+ P
Sbjct: 170 PPPPDAYLRKPSPPSPPPAKLSPPPPPQTQTQPLAKP 206
>03_03_0225 - 15587557-15588774
Length = 405
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 615 SDARRSPPPPVATATRDAGP 674
SD R PPPPVA A A P
Sbjct: 133 SDPNRRPPPPVAVAVPHAHP 152
>03_02_0157 +
6008840-6008908,6009795-6009932,6010921-6011014,
6011313-6011361,6015190-6015265,6015466-6015558,
6015786-6015851
Length = 194
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 573 PADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
P D + P G C+D RR+ P P+ + T + G P
Sbjct: 60 PTDHPLGP-FQGPCTDCRRNQPLPLVSPTSNEGSP 93
>02_03_0039 -
14228876-14228878,14229578-14229727,14230457-14230631,
14231320-14231822
Length = 276
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 597 AVTGRCSDARRSPPPPVATATRDAGPPLRCY 689
+V S A SPPP A A D P RC+
Sbjct: 42 SVRASLSTAAPSPPPRPAAAAADGRAPKRCF 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,216,487
Number of Sequences: 37544
Number of extensions: 379159
Number of successful extensions: 2208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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