Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00862
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81541-2|CAB04412.2|  152|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGP 674
           PPP  +     ++G  + +RR PPPP  T T    P
Sbjct: 43  PPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPP 78



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATAT 659
           PPP  +     ++G  + +RR PPPP  T T
Sbjct: 261 PPPPPTGEPQDLSGEGNASRRPPPPPKGTGT 291


>Z81541-2|CAB04412.2|  152|Caenorhabditis elegans Hypothetical
           protein F48F5.2 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 595 PPSPVAVATRDGARRHQSLQRRATRARRSGAIVGADAA 708
           PP PV+ +TR    R Q   RR +  + SG + G+ ++
Sbjct: 68  PPFPVSSSTRQDTARPQLHARRPSSLKVSGPVQGSSSS 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,563
Number of Sequences: 27780
Number of extensions: 285177
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)