Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00862
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    24   2.1  
At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C...    29   2.4  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   2.4  
At5g36650.1 68418.m04383 hypothetical protein                          29   3.1  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    29   4.1  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    29   4.1  
At5g49700.1 68418.m06153 DNA-binding protein-related contains Pf...    28   5.5  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    28   5.5  
At1g61080.1 68414.m06877 proline-rich family protein                   28   5.5  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   7.2  
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot...    27   9.6  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    27   9.6  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   9.6  

>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 24.2 bits (50), Expect(2) = 2.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPP 644
           PPP      P     C    +SPPPP
Sbjct: 556 PPPPYIYSSPPPVVNCPPTTQSPPPP 581



 Score = 23.8 bits (49), Expect(2) = 2.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 630 SPPPPVATATRDAGPP 677
           SPPPP   AT+   PP
Sbjct: 606 SPPPPTYYATQSPPPP 621


>At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; identical to protein phosphatase 2C (GI:4587992)
           [Arabidopsis thaliana]
          Length = 390

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +3

Query: 552 LARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPPLRCYCWSGRR 707
           L R RPP  D    P V   CS  R +          +       YC  GRR
Sbjct: 87  LKRKRPPMLDLTAAPTVASWCSTTRETAEKGAEVVEAEEDGYYSVYCKRGRR 138


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
           PPP  S   P           +PPPP     + AGPP
Sbjct: 386 PPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPP 422


>At5g36650.1 68418.m04383 hypothetical protein
          Length = 158

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 710 AAASAPTIAPERRARVARRCSDWWRRAPSRVATATGDGGQHYTIGRRWSDSCELKAMSVE 531
           A  S     P R+ R +R C   WRR   RVATA G+      + ++  D C  +  + E
Sbjct: 10  AVRSEKKTLPWRQKRSSRDCC--WRR---RVATAAGEEESRRLLEKKSRDDCRRRRTATE 64

Query: 530 AR 525
            +
Sbjct: 65  KK 66


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 540 HSFKLARVR-PPPADSVVLPAVTGRCSDARRSPPPPVATATR 662
           +SF+L +V+ PPP+ S      T   S    S   P+A +TR
Sbjct: 15  YSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTR 56


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 540 HSFKLARVR-PPPADSVVLPAVTGRCSDARRSPPPPVATATR 662
           +SF+L +V+ PPP+ S      T   S    S   P+A +TR
Sbjct: 15  YSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTR 56


>At5g49700.1 68418.m06153 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 276

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +3

Query: 528 SLDRHSFKLARVRPPPADSV--VLPAVTGRCSDARRSPPPPVATATRDAGPPLRCY 689
           SL  H    + V P   DS   V+    GR   ++  P PPV   TRD  PP+  Y
Sbjct: 32  SLTSHFHLSSTVTPTVDDSSIEVVRRPRGRPPGSKNKPKPPVFV-TRDTDPPMSPY 86


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCS--DARRSPPPPVATAT 659
           PPP    + P VT   +     R PPPP AT T
Sbjct: 157 PPPPPPTITPPVTTTTTGHHHHRPPPPPPATTT 189



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 564 RPPPADSVVLPAVTGRCSDARRSPPPPVATAT 659
           RPPP        +T      +  PPPP  T T
Sbjct: 179 RPPPPPPATTTPITNTSDHHQLHPPPPATTIT 210


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
           PPP  +V  P        A   PPPP    T+ A PP
Sbjct: 528 PPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPP 564


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
           PPP  S   P  +        SPPPPVA+    + PP
Sbjct: 553 PPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPP 589


>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
           low similarity to kinase [Gallus gallus] GI:1370092;
           contains Pfam profile PF00439: Bromodomain
          Length = 678

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 633 PPPPVATATRDAGPP 677
           PPPPV   TRD  PP
Sbjct: 410 PPPPVIEITRDPSPP 424


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 567 PPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPPL 680
           PPP    + P     C +    PPPPV   +    PP+
Sbjct: 609 PPPPPPCIEPPPPPPCIEYSPPPPPPVVHYSSPPPPPV 646


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 552 LARVRPPPADSVVLPAVTGRCSDARRSPPPPVATATRDAGPP 677
           L  + PP  DS   P+ +    D+  SPPPP  T+     PP
Sbjct: 67  LPSILPPLTDSPPPPSDSSPPVDSTPSPPPP--TSNESPSPP 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,095
Number of Sequences: 28952
Number of extensions: 261588
Number of successful extensions: 900
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)