Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00861
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.1  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    27   4.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   9.5  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   9.5  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 339 CTCSADGKSVFC 374
           CTCS DGK  FC
Sbjct: 17  CTCSCDGKLAFC 28


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 334 LQSRVNCS-PGLQRKPGSWSCACVSSFSGG-IASRCKWRVGPRQYSGIRC 191
           L S  +C+  G++RK   W+      F+GG +A R  WR       G  C
Sbjct: 72  LFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCAC 121


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 43   EGKDFSCTRMDCNALNSNHNAEPFNGDRTKR 135
            +G+  S T  D ++L  ++  +PFNG++ +R
Sbjct: 1538 KGRSASYTFSDPSSLEDSNRQKPFNGEKFRR 1568


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 85  LNSNHNAEPFNGDRTKRE 138
           LNSN  A   +GDRT+RE
Sbjct: 451 LNSNFPATSIHGDRTQRE 468


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 478 SIKAFHLFIRCFKYNSNSLCLFRICFTYYACILE 579
           S+  F L+    +Y  +  C F +CFT   C+++
Sbjct: 7   SVIVFALYKFLQRYFHSFHCFFLLCFTVMLCVVQ 40


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 646 NENKNKNTPRFSVTHYFANGV--VSFTKWVALYVFLTIT 756
           NE  N N+PR   TH   NG       KW+   V++ +T
Sbjct: 260 NERNNSNSPRNFSTHGNGNGENGQPRRKWLEEKVYINLT 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,585
Number of Sequences: 5004
Number of extensions: 61835
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)