Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00861
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 31 1.4
03_01_0296 + 2284385-2285629,2287632-2288594 30 1.9
03_01_0103 + 829110-829302,829535-829938 29 3.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.3
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749... 29 5.7
12_01_0217 + 1647319-1648327,1648462-1648577,1648650-1648817,164... 28 7.5
11_01_0216 + 1693889-1694897,1695034-1695149,1695222-1695389,169... 28 7.5
12_01_0827 - 7662180-7662192,7662451-7662764 28 9.9
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744... 28 9.9
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -3
Query: 213 VSTAAYVAALIVDGAGNARGWLLTYFSFSSVAVEGLSIVVTVESVA 76
V AAY+A +V AR LT F +VA L +VVTV +VA
Sbjct: 519 VVEAAYIAVYLVYAPRPARLRALTSFLLLNVAAFSLVVVVTVAAVA 564
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 152 GF*LTSLLVLSPLKGSALWLLLRALQSIRVQEKSLPSL 39
GF + S+++ + G +LW++ A+ R+ KS P+L
Sbjct: 342 GFPVVSVVLFAATLGVSLWIISSAIHHYRIPRKSTPNL 379
>03_01_0103 + 829110-829302,829535-829938
Length = 198
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 240 QGASGVSALVSTAAYVAALIVDGAGNA 160
+GAS +++LV+ AA L++DG G A
Sbjct: 2 RGASALASLVAAAAVALLLLIDGCGGA 28
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 92 VTTMLSPSTATELKEK*VRSQPRAFPAPS 178
++T LSP T ++ K R +PR +PAPS
Sbjct: 323 LSTALSPIALTCMEPKKKRGRPRKYPAPS 351
>05_04_0268 -
19574540-19574582,19574664-19574755,19574843-19574920,
19575095-19575232,19575478-19575606,19575889-19576018,
19576171-19576348,19576715-19576853,19577031-19577120,
19577260-19577421,19577556-19577720,19577909-19578046,
19578657-19578836,19579129-19579257,19579442-19579677,
19579795-19579957,19580030-19580070,19580162-19580489,
19581416-19581553,19581670-19581873
Length = 966
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = -3
Query: 279 RAHASPPSLGASHQGASGVSALVSTAAYVAALIVDGAGNARGWLLTYFS-FSSVAVEGLS 103
R SP +G H ++A ++ A + ARGW S SSV V S
Sbjct: 521 RTETSPEDVGGMHAAVGILTARGGMTSHAAVV-------ARGWGKCCVSGCSSVRVNDAS 573
Query: 102 IVVTVESVAIHTSAGEVFAFLIAETLIAVQP 10
+V +E A+H E +I QP
Sbjct: 574 KIVVIEDKALHEGEWLSLNGSTGEVIIGKQP 604
>12_01_0217 +
1647319-1648327,1648462-1648577,1648650-1648817,
1648911-1649038,1649121-1649220,1649329-1649433
Length = 541
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 297 ENLDPGRAHASPPSLGASHQGASGVSALVSTAAYVAA 187
+ +PG + A+PPS G S + S S AA AA
Sbjct: 15 DEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAA 51
>11_01_0216 +
1693889-1694897,1695034-1695149,1695222-1695389,
1695482-1695609,1695692-1695791,1696124-1696168
Length = 521
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 297 ENLDPGRAHASPPSLGASHQGASGVSALVSTAAYVAA 187
+ +PG + A+PPS G S + S S AA AA
Sbjct: 15 DEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAA 51
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 242 CDAPREGGDACARPGSRFSL 301
C P+ GG AC RP R L
Sbjct: 55 CPRPKNGGSACPRPDGRIPL 74
>07_03_1310 -
25673140-25673418,25673837-25674082,25674189-25674465,
25675474-25675751,25675845-25676378
Length = 537
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 409 WGVMSWSQRRSVQKTLFPSAEQVQSLQSRVNCSP 308
W V SW ++++Q +PS E++ S+ + P
Sbjct: 78 WTVDSWKAKKALQLPEYPSQEELDSVLKTIETFP 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,426,817
Number of Sequences: 37544
Number of extensions: 422550
Number of successful extensions: 1430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -