Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00861
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               29   3.3  
SB_7526| Best HMM Match : LRRNT (HMM E-Value=9.2)                      29   4.4  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   5.8  
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)                 29   5.8  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   28   7.6  
SB_10006| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  28   7.6  

>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 4    EFRLD-CNKCLCDKEGKDFSCTRMDCNAL 87
            E R D CN C C  +G  F CT +DC A+
Sbjct: 1194 EIRKDRCNNCTC--KGGVFDCTNVDCEAM 1220


>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 4   EFRLDCNKCLCDKEGKDFSCTRMDCNALNSNH 99
           E   DCN C+C   G+ + CT +DCN  +SNH
Sbjct: 258 EIPTDCNSCVC-ACGR-WVCTALDCNP-SSNH 286


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 297 RCNPGEQFTRDCNDCTCSADGKSVFCTLRLCDQDITPHI 413
           +C  GE+    C   T      S FC L  C +D+  H+
Sbjct: 3   KCGIGERTGTGCGSITVKGKTISEFCALSECRRDVATHL 41


>SB_7526| Best HMM Match : LRRNT (HMM E-Value=9.2)
          Length = 183

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 391 SQRRSVQKTLFPSAEQVQSLQSRVNCSPGLQRKPGSWSCACVSSFSGGI 245
           SQ+R   K +FPS   + S+ +RV       R   +++C  V+  + G+
Sbjct: 67  SQKRFRLKAVFPSIRPITSISTRVAHESSPPRLAHTYACQLVTCIASGL 115


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = +1

Query: 16   DCNKCLCDKEGKDFSCTRMDCNALNSNHNAE---PFNGDRTKREVSQKPATCVPGSVYNQ 186
            +C+ C+ + +G D  C   +     +N  A     F    +   V +K A   PGS    
Sbjct: 1834 ECDTCMVNNKGSDTKCVACETAKPGANSTASKTPAFGASSSTFPVLEKFAP-PPGS---W 1889

Query: 187  GCNVCRCTDEGRHATCTLMRCPQ 255
             C+ C   ++  H  C     P+
Sbjct: 1890 TCDTCMIVNKAEHLKCLACETPK 1912


>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
          Length = 337

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 40  KEGKDFSCTRMDCNALNSNHNAEPFNGDRTKREVSQKPATCVPGSVYNQGC 192
           KE +DF+C   DC+       A+       +R   +KP  C     Y++GC
Sbjct: 47  KEKRDFTCYWQDCSREQRPFKAQYMLVVHMRRHTGEKPHKC-----YHEGC 92


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 306 PGEQFTRDCNDCTCSADGKSVFCTLRLCD 392
           PG++  +DC  C C  DG+   CT + C+
Sbjct: 250 PGDKVYKDCQLCVCK-DGQLTNCTGQKCN 277


>SB_10006| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 309

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 574 LETIFIYKGLLVDFV*SVAGE*SINENKNKNTPRFSVTHYFANG 705
           + T F+++  ++ +  S+  E   +E +N NTP+  V   F  G
Sbjct: 190 IATYFVFQKAILRYEASLEAEQGTSEQENHNTPKAEVEREFVKG 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,960,623
Number of Sequences: 59808
Number of extensions: 506296
Number of successful extensions: 1725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)