Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00861
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.6  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 324 RDCNDCTCSADGKSVFC 374
           R CND +   DG  + C
Sbjct: 101 RQCNDTSIGVDGCDLMC 117


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 141 YFSFSSVAVEGLSIVVTVESVAIH 70
           Y  F+ + V GLS+V+T+  + +H
Sbjct: 301 YLLFTMILV-GLSVVITIVILNVH 323


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 324 RDCNDCTCSADGKSVFC 374
           R CND +   DG  + C
Sbjct: 102 RQCNDTSIGVDGCDLMC 118


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 294 NLDPGRAHASPPSLGASHQGASGVSALVS 208
           NL        PP+ G S      +SALVS
Sbjct: 371 NLSTALMSQPPPNFGVSQVSPVSMSALVS 399


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 463 KFDYRLFEYHVLAYAAF 413
           K DYR++ + +++YA +
Sbjct: 180 KHDYRVWNHQLISYAGY 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,944
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)