Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00861
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative simila...    29   3.6  
At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote...    29   4.7  
At3g48200.1 68416.m05259 expressed protein                             28   6.2  
At4g37900.1 68417.m05360 glycine-rich protein                          28   8.3  

>At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative similar
           to gibberellin 20-oxidase GI:1109695, GI:9791186
          Length = 378

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 301 QRKPGSWSCACVSSFSGGIASRCKWR 224
           QRKPG  SC   SSF+G  +++  W+
Sbjct: 125 QRKPGE-SCGYASSFTGRFSTKLPWK 149


>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
           kinase, putative leucine rich repeat receptor-like
           kinase, Oryza sativa, PATCHX:E267533
          Length = 688

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 7   FRLDCNKCLCDKEGKDFSCTRMDCNALNSNHNAEPFNGDRTKREVSQKPATCVPGSVYNQ 186
           F+ + N  LC   G DF   R  C+A ++ +N E F     + +  +     +P SVY Q
Sbjct: 239 FQFENNTGLC---GIDFPSLRA-CSAFDNANNIEQFKQPPGEIDTDKSALHNIPESVYLQ 294

Query: 187 -GCNVCRC 207
             CN   C
Sbjct: 295 KHCNQTHC 302


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 652 NKNKNTPRFSVTHYFANGVVSFTKWVALYVFLTIT*FV 765
           NKN  +    V HY    + S   WV  Y+FL +T FV
Sbjct: 430 NKNLASNILKVKHYSVPMISSVISWVTTYIFL-VTSFV 466


>At4g37900.1 68417.m05360 glycine-rich protein 
          Length = 787

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = -1

Query: 575 KIQA*YVKQILNRHNEFELYLKQRINRWKAFIDLVK 468
           K Q+ +  Q+   H + +++L++ + R+KAF+ L+K
Sbjct: 170 KRQSPFFYQVSRAHVDNDVFLQEAVARYKAFLYLIK 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,690
Number of Sequences: 28952
Number of extensions: 328597
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)