Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00860
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       29   0.056
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    28   0.097
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.30 
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    24   1.2  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +3

Query: 66  RCVC-DSERGFI--IQGDKCVAGGCRTDDNCADNSRCIRGQCVDACKAEPCGI-NATCD 230
           +C+C +   G +  I  D C    CR + +C D        C +  K + C + ++ CD
Sbjct: 91  QCICKEGWEGALCNINTDDCSPNPCRNNGSCVDRIADFECNCKNGWKGKTCSLKDSHCD 149



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/35 (22%), Positives = 11/35 (31%)
 Frame = +3

Query: 114 CVAGGCRTDDNCADNSRCIRGQCVDACKAEPCGIN 218
           C    C     C D     +  C +  +   C IN
Sbjct: 72  CKVNPCENGGTCVDKINAFQCICKEGWEGALCNIN 106


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 0.097
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
 Frame = +3

Query: 51  IDSRGRCVC-DSERGFIIQGD--KCVAGGCRTDDNCAD-----NSRCIRG----QC---V 185
           I +  RC C D   G   Q +  +C +  C+    C D     + +C +G     C   V
Sbjct: 164 IGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCELNV 223

Query: 186 DACKAEPCGINATCDAVGHRSHCLALPATL 275
           D CK  PC    TC  + +   C     TL
Sbjct: 224 DDCKPNPCQNGGTCHDLVNSFSCSCPSGTL 253



 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 174 GQCVDACKAEPCGINATCDAVGHRSHCL 257
           G+ VD C   PC   ATC    ++  CL
Sbjct: 97  GEYVDWCSTNPCENQATCVQNKNQYQCL 124



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 129 CRT-DDNCADNSRCIRGQCVDACKAEPC 209
           C+T D++C + S    G C+D   +  C
Sbjct: 20  CQTNDEDCTETSCMNGGTCIDGINSYIC 47


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 636 YVLFTSFVYAFDVECFCG*CY 574
           Y++F S +Y  +V C C  CY
Sbjct: 910 YLIFVSTLYTANVVCICHVCY 930


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/13 (76%), Positives = 10/13 (76%), Gaps = 2/13 (15%)
 Frame = -1

Query: 352 FDLNIWCW--EIG 320
           F LNIWCW  EIG
Sbjct: 129 FVLNIWCWIVEIG 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,787
Number of Sequences: 336
Number of extensions: 4123
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)