Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00860
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    29   1.00 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   3.0  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   4.0  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   5.3  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.0  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   7.0  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.3  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   9.3  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.3  

>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 338 DIQVECLADGVRVRLKIKDFNGLLYVKSYSKDERCRKVVEMPKDEESFVFFTVHFGDAA 514
           D  +E  ADG  +R+       +LYV+S   DE   KV + P D+  +  F + F DAA
Sbjct: 320 DTCIEVQADGYYLRIVDLYEEPVLYVRSPDSDE--EKVYKYPNDDPYYSEFKI-FLDAA 375


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 192 CKAEPCGINATCDAVGHRSHCLALPATLEILEFSVMQQQQC-TEPISQHQIFRSNVWLTE 368
           C   P  ++    A GH S+C+    ++E  +   +    C  +   +H+  + +V+LTE
Sbjct: 129 CDCRPHWVDGVNVACGHGSNCINRMTSIECTDEDNVCGPSCQNQRFQRHEFAKVDVFLTE 188


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 379 SDSNSVSQTFD--LNIWCWEIGSVHCCCCITLNSRISSVAGNARQ*ERCPTASQV 221
           +D   VS  +D  + IW +  G  HC    + NSR+  +  + R+   C  +S++
Sbjct: 438 NDEKIVSGGYDGTVRIWNFNTGEQHCVLHNSRNSRVFGLQFDHRRIIACTHSSEI 492


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 199 ALQASTH*PRMHRELSAQLSSVRQPPATHLSP*IIKPRSESQTH 68
           +L  STH P     LS   +++ +    H SP I+KP  ++  H
Sbjct: 169 SLLPSTHSPHSPAPLSTMQTALMRLRTYHPSPIILKPVEQAVNH 212


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 195 CRHLHIDRECIANYLRNCRQCGSRQQRIY 109
           C H +   EC+ N+L+  + C + +Q++Y
Sbjct: 100 CGHTYC-YECLLNWLKESKSCPTCRQKLY 127


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 419 SYSKDERCRKVVEMPKDEESFVFFTVHF 502
           SYSK +  R V ++P++ + FVF  + +
Sbjct: 304 SYSKTKLGRAVAKLPQNLQPFVFMIIQY 331


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 552 NANSSETGNINHKSIPHQMHIQNW*TKRNSCIQ 650
           N N S T +++   +PH + + N+ T  +SC Q
Sbjct: 292 NINES-TNHVDSSYLPHPIQLSNYFTLPSSCAQ 323


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 462 LKTKKVLFSSLYISEMRPCSCQWLSKLRSSNANSSE 569
           LKT + L S   +  MRP S + ++ L+ SN    E
Sbjct: 521 LKTPRSLISRKAVWRMRPASVRQINFLKKSNLKLDE 556


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 502 EMYSEENKTFFVFRHLYNFPASLILTVTFYVQKAVEIF 389
           +MYS     F++   ++ FPASL+L   F + K + +F
Sbjct: 100 QMYSWSGTAFYLGYLVFEFPASLLLQ-RFPLSKTLCVF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,728
Number of Sequences: 5004
Number of extensions: 65960
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)