Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00860
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0281 + 22014394-22015534,22016041-22017056                       31   1.0  
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762...    30   1.8  
02_04_0486 - 23351960-23353093                                         30   1.8  
02_04_0483 - 23305492-23306625                                         30   1.8  
02_04_0542 - 23762549-23762961,23763051-23763453                       29   4.2  
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995...    29   5.5  

>09_06_0281 + 22014394-22015534,22016041-22017056
          Length = 718

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 72  VCDSERGFIIQGDKCVAGGCRTDDNCADNSRCIRGQCVD 188
           VC   RG+   G+  VAGGC+  D C    RC  G+C +
Sbjct: 317 VCRCRRGY--GGNPYVAGGCQDIDECKLAGRCY-GECTN 352


>08_02_1159 +
           24773328-24773994,24775430-24775558,24776080-24776220,
           24777393-24777487,24777545-24778606
          Length = 697

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = +3

Query: 27  CRPAEGRIIDSRG-RCVCDSERGFIIQGDKCVAGGCRTDDNCADNSRCIRGQCVDACKAE 203
           C+   G   D  G RC C    G+  +G+  V GGCR  D C   S  I   C   CK  
Sbjct: 190 CKGYNGTTADYDGYRCYCSD--GY--EGNPYVDGGCRDIDEC--KSPHIY-PCYGDCKNT 242

Query: 204 PCGINATCDAVGHRSHCLALPATLEILEFSVMQQQQC 314
             G +  C   G++ +   L    +I E +  ++  C
Sbjct: 243 RGGYDCQCHH-GYKGNASILNGCQDINECAEPEKYSC 278


>02_04_0486 - 23351960-23353093
          Length = 377

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 487 ENKTFFVFRHLYNFPASLILTVTFYVQKAVEIFNLKSDSNSVSQTFDLNIWCWEIG 320
           +NK F     LY++P ++ + +     +   +    S SN+   T D+NIW +E G
Sbjct: 300 QNKVFLP--RLYDWPETIHVDIVTRDGETAFVPKSSSSSNTKEITSDINIWFYEFG 353


>02_04_0483 - 23305492-23306625
          Length = 377

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 487 ENKTFFVFRHLYNFPASLILTVTFYVQKAVEIFNLKSDSNSVSQTFDLNIWCWEIG 320
           +NK F     LY++P ++ + +     +   +    S SN+   T D+NIW +E G
Sbjct: 300 QNKVFLP--RLYDWPETIHVDIVTRDGETAFVPKSSSSSNTKEITSDINIWFYEFG 353


>02_04_0542 - 23762549-23762961,23763051-23763453
          Length = 271

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 126 GCRTDDNCADNSRCIRGQ--CVDACKAEPCGINATCD 230
           GC +D  C+    C  G   C   C+A PC + AT D
Sbjct: 29  GCASDQCCSKWGFCGTGSDYCGTGCQAGPCDVPATND 65


>04_03_0768 -
           19396146-19396607,19397855-19398175,19398424-19399569,
           19400073-19400855,19402114-19402149
          Length = 915

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 24  PCRPAEGRIID---SRGRCVCDSERGFIIQGDKC 116
           P +PA   +ID    R RC    ERGF ++GD C
Sbjct: 225 PIQPAISPLIDLGMPRQRCRDFEERGFCLRGDMC 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,663,013
Number of Sequences: 37544
Number of extensions: 461717
Number of successful extensions: 1244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)