Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00860
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 330 QHQIFRSNVWLTELESDLRLK 392
           ++QI +SNVWL  + +D +L+
Sbjct: 69  KNQIMKSNVWLRFIWTDYQLQ 89


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = +3

Query: 468 TKKVLFSSLYISEMRPCSCQWLSKLRSSNANSSETGNINHKSIPHQMHIQNW*TKRNSCI 647
           +K+ LFS L+  +++      L+  + S  + + TGN+++ +  +  +       R S +
Sbjct: 686 SKQGLFSKLFAKKVKKDKDIILNVPKESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLV 745

Query: 648 QCVHVNNSR-HNRQYRPSAYLLHENNFHVLETKSVP 752
               V + R    +  P    L E   + L T   P
Sbjct: 746 STTSVKSLRLEGDETPPYGMELTEAEHYALYTAMAP 781



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 616 KTGEQNVTLAFNVSMLTTAGTIANT 690
           K   Q++T   NVS LTT  T  N+
Sbjct: 711 KESTQSLTTTGNVSYLTTNNTSNNS 735


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 630 KRNSCIQCVHVNNSRHNRQ 686
           +RNSC+       S+HN Q
Sbjct: 375 RRNSCLGSTETYYSKHNTQ 393


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 549 SNANSSETGNINHKSIPHQMHIQNW*TKRNSCIQCVHVNNSRHNRQYRPSAYLLHEN 719
           S+A++S           H M + +    R+  I   H +   H   Y+ S YL++EN
Sbjct: 37  SSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYEN 93


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 486 SSLYISEMRPCSCQWLSK 539
           +S  +SE    SC+WLS+
Sbjct: 19  ASTILSESAGTSCKWLSE 36


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 688 YWRLCLLLL 662
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 688 YWRLCLLLL 662
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 688 YWRLCLLLL 662
           YW LC+LLL
Sbjct: 90  YWDLCMLLL 98


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 201 QLCRHLHIDRECIANYLR 148
           ++   LH+   CI N+L+
Sbjct: 88  EIAEKLHVSHTCIENHLK 105


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 183 VDACKAEPCGINATCD 230
           +D C ++ CGI   C+
Sbjct: 79  IDPCASKYCGIGKECE 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,793
Number of Sequences: 438
Number of extensions: 4876
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)