Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00860
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    31   1.1  
At2g20370.1 68415.m02378 exostosin family protein contains Pfam ...    29   2.6  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    29   4.6  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    29   4.6  
At4g10720.1 68417.m01752 ankyrin repeat family protein contains ...    28   6.1  
At1g65330.1 68414.m07408 MADS-box family protein similar to MADS...    28   6.1  
At1g65300.1 68414.m07405 MADS-box protein (AGL38) similar to MAD...    28   6.1  
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    28   8.1  
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    28   8.1  

>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
 Frame = +3

Query: 24  PCRPAEGRIIDSRGRCVCDSERGFIIQGDKCVAGGCRTDD-------NCADNSRCIRGQC 182
           PC P +  +      C C  +   +I GD  V G  + +D       NC     C    C
Sbjct: 403 PCDPCQVLV---NATCFCKKKVETVICGDMNVKGELKAEDGVYSCSFNCGKPLGCGNHFC 459

Query: 183 VDACKAEPCGINATCDAVGHRSHCLALPATLEILEFSVMQQQQCTEPI 326
            + C   PCG    CD +  R        T   LE  +  +Q C +PI
Sbjct: 460 SEVCHPGPCG---DCDLLPSRVKTCYCGNTR--LEEQI--RQSCLDPI 500


>At2g20370.1 68415.m02378 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 619

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 153 DNSRCIRGQCVDACKAEPCGINATCDAVGHRSHCLALPATLEILEFSVMQQQQCTEPISQ 332
           DN + IRGQ +D C+    G    CD     S C A  + +++ + S+   Q   +  ++
Sbjct: 376 DNPKSIRGQIIDQCRNSNVGKLLECDF--GESKCHAPSSIMQMFQSSLFCLQPQGDSYTR 433

Query: 333 HQIFRS 350
              F S
Sbjct: 434 RSAFDS 439


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = +3

Query: 12  GECIPCRPAEGRIIDSRGRCVCDSERGFIIQGDKCVAGGCRTDDNCADNSRCIRGQCVDA 191
           GEC PCR  E  +     +C C    G + +   C     R + +C +   C +  C   
Sbjct: 262 GECPPCR--ERAVY----KCSC----GKVKEEKDCCERVFRCEASCENMLNCGKHVCERG 311

Query: 192 CKAEPCGINATCDAVGHRS 248
           C A  CG+   C   G RS
Sbjct: 312 CHAGECGL---CPYQGKRS 327


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 75  CDSERGFIIQGDKCVAGGCRTDDNCADN--SRCIRGQCVDACKAEPC 209
           C    G+  +G+  + GGC+  D C D   ++C + +CV+   +  C
Sbjct: 266 CSCHNGY--EGNPYIPGGCQDIDECRDPHLNKCGKRKCVNVLGSYRC 310


>At4g10720.1 68417.m01752 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 445

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
 Frame = +3

Query: 528 WLSKLRSSNANSSETGNINHKSIPHQ--MHI---QNW*TKRNSCIQCVHVNNSRHNRQYR 692
           W+ +LR ++A S E   +N +       +HI   QN        ++C  VN + HNR   
Sbjct: 161 WVQRLRQTDAESLEMQFLNKRDQDGNTALHIAAYQNRFKAVKILVKCSAVNRNIHNRTGL 220

Query: 693 PSAYLLHENNFH 728
            +  +LH    H
Sbjct: 221 TALDILHNQRDH 232


>At1g65330.1 68414.m07408 MADS-box family protein similar to
           MADS-box transcription factor GI:6580941 from [Picea
           abies]
          Length = 279

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 236 GASLSLPCIAGYTGNPRIQCNATTTMYRTDFPTPDI 343
           G    +PC+     +P I C AT T   TD   P+I
Sbjct: 240 GEDEGIPCMDNNNYHPEIDCLATVTTAPTDVCAPNI 275


>At1g65300.1 68414.m07405 MADS-box protein (AGL38) similar to
           MADS-box transcription factor GI:6580947 from [Picea
           abies]; contains Pfam profile PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain)
          Length = 278

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 236 GASLSLPCIAGYTGNPRIQCNATTTMYRTDFPTPDI 343
           G    +PC+     +P I C AT T   TD   P+I
Sbjct: 239 GEDEGIPCMDNNNYHPEIDCLATVTTAPTDVCAPNI 274


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 7   CMVNVFLVDQQKDVL*ILGVDAFVTRNV 90
           C V+ F +D++K+V+ +LG D   TRN+
Sbjct: 325 CNVS-FFIDEKKNVVVVLGKDVLNTRNI 351


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 60  RGRCVCDSERGFIIQGDKCVAGGCRTDDNCADNSRCIRGQCVD--ACKAEPCGINATCDA 233
           R   +C    GF   G+  ++ GC+  + C  +S   R  C D   C+ +  G    C +
Sbjct: 259 RNGYICRCNEGF--DGNPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYCKCQS 316

Query: 234 VGHR 245
            G+R
Sbjct: 317 -GYR 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,134
Number of Sequences: 28952
Number of extensions: 360167
Number of successful extensions: 986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)