Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00859
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    28   1.3  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    27   3.0  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   3.9  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   6.9  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 483 EKNNSVHSFGFSF*GVSRIAEGRSHIHTSLV*YQPVSQ 370
           E NNS+H+F F    V    +GR  +H   +   PVSQ
Sbjct: 52  ELNNSLHNFDFKIKRVQDQLDGRLTLHFQNLSGDPVSQ 89


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 195 WREYGDGFLVLKFTSCHHSFVLNTLTRNHSFFVSLLCVLLRVKL 326
           WRE  D FLV + T   + F +  +     F  S+L + L + L
Sbjct: 139 WRETLDSFLVWRHTCLRYPFGMQQMELLVDFSFSILLIFLGMNL 182


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 203 IR*WIFGVKIYIVSS*LRFEYTYEKPQFFCFVTLCVITSKTL 328
           +R ++ G  I I+   L FE    K QF C+ T+CV   K++
Sbjct: 101 LRCYVRGYSIVILDVPLLFE---AKMQFICWKTICVSCDKSI 139


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 769 PEAFWQYESVPND*SYTVINAKDLLFP 689
           P  FW+Y +VPN   +  + + D + P
Sbjct: 437 PAPFWKYVAVPNPHDWPQVGSYDTISP 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,270
Number of Sequences: 5004
Number of extensions: 65192
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)