Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00859
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462...    29   3.1  
07_03_1016 - 23313210-23313827,23314649-23314717                       29   4.1  
02_05_0488 + 29448430-29448526,29448649-29448756,29448855-294490...    28   9.5  
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967...    28   9.5  

>02_05_0410 +
           28744716-28744841,28745361-28745965,28746151-28746270,
           28746597-28746737,28748626-28749370
          Length = 578

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 674 WPSIRDERALPVRSQHSIRS*TNIPSSHMTVMEWSHSGHSLYTSRFHNSYVI 519
           WP+ R+  A   RS H+  S +N  SS  +    ++S HS Y    H   ++
Sbjct: 370 WPTQRNALAGSTRSHHAKNSSSNSSSSGASSASKNNSSHSGYHHHHHQKPLV 421


>07_03_1016 - 23313210-23313827,23314649-23314717
          Length = 228

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 739 PND*SYTVINAKDLLFPIVS*SGPVYEMNAH 647
           P D  +T ++  D L PI+S +GP Y +  H
Sbjct: 50  PGDKCWTAVDLSDHLRPIMSFAGPFYAVTTH 80


>02_05_0488 +
           29448430-29448526,29448649-29448756,29448855-29449000,
           29449109-29449319,29449752-29449989,29450098-29450248,
           29450353-29450682
          Length = 426

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 HNKVPHLKLILSVAIKCVLFHCRNGW 187
           HN +P +  IL V I C LF+C   W
Sbjct: 37  HNGMPIMVSILVVVIICTLFYCVYCW 62


>02_03_0285 -
           17296164-17296203,17296406-17296524,17296572-17296742,
           17298878-17298985,17299783-17299905,17300057-17300143,
           17300765-17300884
          Length = 255

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 162 FCFIVETDGER-WREYGDGFLVLKFTSCHHSFVLNTLTRNHSFFVSLLCVLL 314
           F  I+ET+ E+ W  Y     V  F +CHHS+ +       +F+  L+  L+
Sbjct: 9   FTLIMETEEEQLWWGY---LSVKHFLTCHHSYKIQCNKVFSTFYTPLIAALM 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,209
Number of Sequences: 37544
Number of extensions: 355273
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)