Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00859
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  29   4.2  
SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               28   9.6  

>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +1

Query: 553 KEWPECDHSITVMCDE-GMFV*DLIL--CCDLTGSARSSRILGQIMTQSETTNL 705
           + WPE    + V+C   G +V D      C L   AR  R +GQ   Q E++N+
Sbjct: 84  QRWPEYGEPVCVVCGRYGAYVCDQTEQDICSLECKARHLRDIGQHHNQEESSNV 137


>SB_58662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 749 RKRPKRLKLHGDQCKRFVVSDCVMIWPSIRDERALPVRSQHSIRS*TN 606
           R+R KR    G Q +  + ++   IWPS+  E  +P   + S+ + T+
Sbjct: 37  RRRGKRPSSRGRQRRAAMAANGTGIWPSVNGEVRIPYVLEQSLSAKTH 84


>SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 163

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 568 CDHSITVMCDEGMFV*DLILCCDLT 642
           CD  +T+ CD  +   DL+LCCDLT
Sbjct: 60  CD--LTLCCDMSLCC-DLLLCCDLT 81



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 568 CDHSITVMCDEGMFV*DLILCCDLT 642
           CD  +T+ CD  +   DL+LCCDLT
Sbjct: 120 CD--LTLCCDMSLCC-DLLLCCDLT 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,119,720
Number of Sequences: 59808
Number of extensions: 451797
Number of successful extensions: 976
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)