Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00858
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6RAL8 Cluster: Predicted protein; n=1; Ajellomyces cap...    35   1.8  
UniRef50_Q4SIX1 Cluster: Chromosome 21 SCAF14577, whole genome s...    33   5.4  
UniRef50_A0D938 Cluster: Chromosome undetermined scaffold_41, wh...    33   5.4  
UniRef50_UPI00015B4294 Cluster: PREDICTED: similar to TamA; n=1;...    33   7.1  
UniRef50_UPI000069E263 Cluster: UPI000069E263 related cluster; n...    33   7.1  
UniRef50_Q2R164 Cluster: Remorin, C-terminal region family prote...    33   7.1  
UniRef50_UPI0000F1ED40 Cluster: PREDICTED: similar to CG3047-PA;...    33   9.4  

>UniRef50_A6RAL8 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 554

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 396 GAFYRHHTLTTEYMNKIYYNGAPEAHNVSRLRETHFSSVILT*QLIILMEMLYLTRFKMA 575
           GAF  +HT       K+YY G  +   +  + +T    +++T  L I   +L +++F + 
Sbjct: 111 GAFTIYHTANRARWPKLYYFGGRDESRIQGMTDTEVIRIVITDSLTITATVLTISKFYIE 170

Query: 576 P 578
           P
Sbjct: 171 P 171


>UniRef50_Q4SIX1 Cluster: Chromosome 21 SCAF14577, whole genome
           shotgun sequence; n=4; Tetraodontidae|Rep: Chromosome 21
           SCAF14577, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 571

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 530 HYTHGNVIPHQVQNGSKNTPLLYQYASQLKAQSQHLGGVHHHQMQGQSKRRPET-VRRNT 706
           H+ H +   HQ Q+    +P  YQ       Q Q LGG H HQ+  QS   P   VRR++
Sbjct: 274 HHHHHHQHQHQQQHSQFPSPNFYQQQVHTPPQQQ-LGGTHGHQLH-QSIGLPHAQVRRSS 331

Query: 707 FTE 715
            T+
Sbjct: 332 PTQ 334


>UniRef50_A0D938 Cluster: Chromosome undetermined scaffold_41, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_41,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1326

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 288 SPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHHTLTTEYMNKIYYNGAPE 467
           S   + T D+F++ P   + S+SN QEP N     +G F+ H        + I     P+
Sbjct: 521 SANMKNTDDSFTVKPLEDFSSVSNAQEPFN---RGEGGFWVHEKEFLSLFDYIQIAYDPK 577

Query: 468 AHNVSRLR 491
            +N+  L+
Sbjct: 578 RYNMQVLQ 585


>UniRef50_UPI00015B4294 Cluster: PREDICTED: similar to TamA; n=1;
            Nasonia vitripennis|Rep: PREDICTED: similar to TamA -
            Nasonia vitripennis
          Length = 1465

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 276  NFFPSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRH---HTLTTEYMNKI 446
            ++ P PP +  T T+   P     +    Q+PI ++ +N G  Y+H   +++ T +M   
Sbjct: 1116 DYKPVPPSQSKTGTYKPVPPPKPKNYRPPQQPIIQDENNGGNMYQHAKSYSMGTSHM--- 1172

Query: 447  YYNGAPEAHNVSR 485
             +NGA    N+ R
Sbjct: 1173 -HNGAENGVNMQR 1184


>UniRef50_UPI000069E263 Cluster: UPI000069E263 related cluster; n=2;
           Xenopus tropicalis|Rep: UPI000069E263 UniRef100 entry -
           Xenopus tropicalis
          Length = 355

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +3

Query: 417 TLTTEYMNKIYYNGAPEAHNVSRLRETHFSSVILT*QLIILME--MLYLTRFKMAPKTHR 590
           T T  Y + +Y NGA E+ + + +    F   ++T  + +L    ++Y+T FKM  K+  
Sbjct: 15  TYTVLYRDYMYANGAEESSDQAAVSYVTFGIFVITCVIGLLGNGIVIYITGFKMKQKSKI 74

Query: 591 YYISMLLS 614
           ++++M ++
Sbjct: 75  WFLNMAVA 82


>UniRef50_Q2R164 Cluster: Remorin, C-terminal region family protein,
           expressed; n=4; Oryza sativa|Rep: Remorin, C-terminal
           region family protein, expressed - Oryza sativa subsp.
           japonica (Rice)
          Length = 493

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 557 HQVQNGSKNTPLLYQYASQL--KAQSQHLGGVHHHQMQG---QSKRRPETVRRN 703
           HQ+ +  ++ P  ++ A +   +A S H GG HHH  +G   Q ++R   VRR+
Sbjct: 137 HQLVSARRSVPSKWEDAEKWVRQASSDHHGGHHHHHGKGSKLQEEKRASAVRRS 190


>UniRef50_UPI0000F1ED40 Cluster: PREDICTED: similar to CG3047-PA; n=2;
            Danio rerio|Rep: PREDICTED: similar to CG3047-PA - Danio
            rerio
          Length = 1428

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 288  SPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHH-TLTTEYMNKIYYNGAP 464
            SP Q RTT + S H   T  SLS  Q P   +         HH T+TT   +  +    P
Sbjct: 1216 SPHQHRTTTSLSPHQHRTTTSLSPHQCPSQHHFTITTPVSHHHFTITTPVSHHHFTITTP 1275

Query: 465  EAHN 476
             +H+
Sbjct: 1276 ASHH 1279


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,936,084
Number of Sequences: 1657284
Number of extensions: 16321859
Number of successful extensions: 48080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48030
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)