Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00858
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.88 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   3.6  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   3.6  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   4.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 625 KPTLGRCAPPPNAGTV*KASRNSETQHFY 711
           KP LGR   PP+   V K  R SE Q+F+
Sbjct: 128 KPNLGRYDNPPDWAEVVKYFRGSELQNFF 156


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 138 RLEELSDPSCTSLPSVERSTL 76
           RL  + DPSC  LPS+   +L
Sbjct: 426 RLRPMDDPSCVQLPSIRSLSL 446


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 354 IKKDTYEKDASR--MYPWFVLGVER 286
           I K+ YEK  SR  MYP+FVL + R
Sbjct: 141 IPKEIYEKMLSRARMYPYFVLPLPR 165


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 632 HLGGVHHHQMQGQSKRRPETVRRNTFTEN 718
           HLG  +   MQG S++R  + R+    EN
Sbjct: 384 HLGNANDFNMQGSSRKRKASDRQRESREN 412


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 169 DVDRKNYAHRLSTPSISGMSTKSH 240
           DV+R +Y   LSTP     ST SH
Sbjct: 107 DVNRGDYCFLLSTPVECSASTNSH 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,458
Number of Sequences: 5004
Number of extensions: 70033
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)