Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00858
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 33 0.23
05_03_0458 + 14280953-14281866,14281964-14282912 33 0.30
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 30 2.1
03_02_0350 - 7734494-7734952,7735765-7736133 30 2.1
08_02_0761 - 20889724-20889849,20889894-20890055,20890307-208904... 29 2.8
02_01_0302 - 2021221-2023305 29 3.7
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 28 6.5
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 8.6
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 28 8.6
04_04_0787 + 28057609-28057740,28058000-28058148,28058640-28058805 28 8.6
02_05_0774 + 31667839-31668540 28 8.6
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 557 HQVQNGSKNTPLLYQYASQL--KAQSQHLGGVHHHQMQG---QSKRRPETVRRN 703
HQ+ + ++ P ++ A + +A S H GG HHH +G Q ++R VRR+
Sbjct: 137 HQLVSARRSVPSKWEDAEKWVRQASSDHHGGHHHHHGKGSKLQEEKRASAVRRS 190
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 258 PETSCSNFFPSPPQERTTDTFSMHPSHTYPSLSNRQEP 371
P +SC N PSPP +T T S P+ PSL+ P
Sbjct: 22 PPSSCRNAAPSPPSSNSTPTSSTTPT-VPPSLTTTSSP 58
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 17 PPEAPLSPEVPQRE---RLGSMKSVDRST---DGNDVHDGSDNSSRRMRLTSAEDSKMLT 178
P E P+ +V E R+GS + ST D +GSD +S+ L EDS ML
Sbjct: 821 PVETPIPEQVENVEIEDRVGSCAHSEESTVDKDSECPEEGSDITSQNNNLPDHEDSTMLN 880
Query: 179 V 181
V
Sbjct: 881 V 881
>03_02_0350 - 7734494-7734952,7735765-7736133
Length = 275
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 599 QYASQLKAQSQHLGGVHHHQMQGQSKRRP 685
Q+AS L+ Q H HHHQ Q R+P
Sbjct: 190 QWASPLQQQQHHHHQHHHHQQQQHQLRQP 218
>08_02_0761 -
20889724-20889849,20889894-20890055,20890307-20890406,
20890597-20890604
Length = 131
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 267 SCSNFFPSPPQERTTDTFSMHPSHTYPSLSN 359
+C N P+ + T+D FS+H S Y + SN
Sbjct: 67 ACRNILPNNDADSTSDIFSIHFSGVYKTKSN 97
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 246 TH*RPETSCSNFFPSPPQERTTDTFSMHP-SHTYPS 350
+H P S + +PSPP TT ++ P HT PS
Sbjct: 482 SHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPS 517
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 50 QRERLGSMKSVDRSTDGNDVHD-GSDNSSRRMR 145
+RE GSM S+ S DGN S +SSRRMR
Sbjct: 16 RREGGGSMASMWLSADGNGAFSRSSSSSSRRMR 48
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 17 PPEAPLSPEVPQRERLGSMKSVDRST-DGNDVHDGSDN 127
PP PL ++P+ E G+ + S DG+D+ SD+
Sbjct: 115 PPPPPLEDDIPEEEEEGTGTVANNSAKDGDDILRRSDS 152
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Frame = +3
Query: 279 FFPSPPQERTTDTFSMHPSHTYPSLS-------NRQEPI--NENVHNDGA 401
++P PP E +T S HP S S N Q P+ E ++N+G+
Sbjct: 204 YYPPPPAEARANTSSNHPDFVQGSSSSPDDHTMNHQRPVVLKEMIYNEGS 253
>04_04_0787 + 28057609-28057740,28058000-28058148,28058640-28058805
Length = 148
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 258 PETSCSNFFPSPPQERTTDTFSM 326
P+ C NFF S P + T TF++
Sbjct: 125 PQERCMNFFSSIPSQHNTTTFAI 147
>02_05_0774 + 31667839-31668540
Length = 233
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 8 GIMPPEAPLSPEVPQRERL 64
G PP PLSP VP+ E+L
Sbjct: 185 GSPPPPTPLSPPVPEMEKL 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,217,190
Number of Sequences: 37544
Number of extensions: 454660
Number of successful extensions: 1390
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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