Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00858
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15) 31 1.2
SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11) 30 2.2
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 29 2.9
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8) 29 2.9
SB_32739| Best HMM Match : PA (HMM E-Value=0.19) 29 5.0
SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 29 5.0
SB_17326| Best HMM Match : DUF1127 (HMM E-Value=0.71) 28 6.6
SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08) 28 6.6
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_36522| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
Length = 1466
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 17 PPEAPLSPEVPQRERLGSMKSVDRSTDGNDVHDGSDNSSRRMRLTSAED 163
PP+ P + E P+ G+ V+ S+ NDV SD+ + +++ D
Sbjct: 1166 PPDRPDANETPENHASGNQLRVESSSQENDVSSRSDSFTSVAKVSGVGD 1214
>SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 29 PLSPEVPQRERLGSMKSVDRSTDGNDVHDGSDNSSRR 139
P++PE+ + L + +S+D+ T D+H SD ++R
Sbjct: 223 PINPEIHRPRDLSAQRSIDQQTIDPDIHRPSDPLAQR 259
>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
Length = 382
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 261 ETSCSNFFPSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHHTLTTEYMN 440
+T + + PQE T D SMH S + ++S Q+ E + + + H +T+E
Sbjct: 217 DTYSIHSYQHAPQESTCDLESMHYSGSIGTVSMHQDLHQEMAEHSSSSFSDH-MTSEVTF 275
Query: 441 KIYYNGAPEAHN 476
K AP HN
Sbjct: 276 KYEEQAAP-PHN 286
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 184 NYAHRLSTPSISGMSTKSHPRHISVRRQVVLTSFPL----HPKNEPRIHSRCILLIRILL 351
N + STPS G HPR ++V Q +L L +P P +++ + IR+ L
Sbjct: 801 NTVNLQSTPSTGGQKLHGHPRSMNVSPQPLLPQVHLMNATYPLGTPALNNSQLARIRLGL 860
Query: 352 YPTDRNQSM 378
+ Q M
Sbjct: 861 AILSQQQMM 869
>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
Length = 649
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 184 NYAHRLSTPSISGMSTKSHPRHISVRRQVVLTSFPL----HPKNEPRIHSRCILLIRILL 351
N + STPS G HPR ++V Q +L L +P P +++ + IR+ L
Sbjct: 20 NTVNLQSTPSTGGQKLHGHPRSMNVSPQPLLPQVHLMNATYPLGTPALNNSQLARIRLGL 79
Query: 352 YPTDRNQSM 378
+ Q M
Sbjct: 80 AILSQQQMM 88
>SB_32739| Best HMM Match : PA (HMM E-Value=0.19)
Length = 319
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 160 GFQDVDRKNYAHRLSTPSISGMSTKSHPRHISVRRQVVLTSFPLHPKNEPRI 315
GF +VD KNY+ LS P G + + R V+ T F +N+ R+
Sbjct: 147 GFDNVDLKNYSVLLSFPEKPGEIIIQDGGNKELNRTVIDTKFLEASENDSRV 198
>SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 4 DWDYASGSTVEPRSTSARETRQHEKRRPFY 93
DW Y S S + P+ E RQH P +
Sbjct: 207 DWPYGSASALLPKKADTFERRQHAPPPPIF 236
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 267 SCSNFFPSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHH 416
S F SP RT T S+ H +PS S P G + HH
Sbjct: 553 SSPTFVSSPKPSRTHATQSIRDGHHHPSRSKSATPYAGRDRQLGNYREHH 602
>SB_17326| Best HMM Match : DUF1127 (HMM E-Value=0.71)
Length = 333
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/101 (23%), Positives = 37/101 (36%)
Frame = -3
Query: 414 DGDRKRRHCEHSH*LVPVGWIKKDTYEKDASRMYPWFVLGVERERS*NNLSPDANVSRVT 235
D D + EH +P + KD R Y E RS + V+++
Sbjct: 113 DTDSESSGAEHERWGIPYNRYRDVNNNKDIRRSYK------EPGRSLSEGPTHEKVTKIQ 166
Query: 234 FGRHTRYRRCRESVSIIFTVNILESSAEVSLIRLEELSDPS 112
HT + C ES ++ S+ +SL L E + S
Sbjct: 167 NRHHTEHSDCEESSDSPLNYYVINSTKAISLANLFEYNSKS 207
>SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08)
Length = 349
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +3
Query: 246 TH*RPETSCSNFFPSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHHTLT 425
TH + +CS P +RTT HPS+ + + P N+ ++ + + T
Sbjct: 141 THPGNDNTCSISITHPGNDRTTSISITHPSNDRTTSISITHPSNDRTNSTNIIHPSNDST 200
Query: 426 T 428
T
Sbjct: 201 T 201
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 112 VYIIAVCRTVDAFHAAESLSLRYFGAQRCFRRHNPS 5
++I A CR ++ H ++ Y RC RR NP+
Sbjct: 256 MFIRATCRVLNYRHVTMLSNVLYLKYYRCHRRANPA 291
>SB_36522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 471 ELQEHRYNKFYSCILLSVCDGDRKRR 394
EL+ H+YN YS +CD R+RR
Sbjct: 273 ELKGHKYNCPYSSCKCELCDRGRERR 298
>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 586 TVIISVCFSVKGSKPTLGRCAPPP 657
T I+S+ F+ +KP CAPPP
Sbjct: 137 TAIVSLIFAEYVAKPFFPECAPPP 160
>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 264 TSCSNFFPSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHHTLTTEYMNK 443
++ N F S P+E T ++ + S+T+ LSN ++ + D Y+ TL E N+
Sbjct: 133 STMKNLF-SIPEESETRLWNKYMSNTFELLSNMEQSV-----QDAGLYQGQTLVIEQQNE 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,774,272
Number of Sequences: 59808
Number of extensions: 555539
Number of successful extensions: 1719
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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