Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00858
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra...    29   2.5  
Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical
           protein B0361.3 protein.
          Length = 627

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +2

Query: 20  PEAPLSPEVPQRERLG-SMKSVDRSTDGNDVHDGSDNSSRRMRLTSAEDSKMLTVKIMLT 196
           P AP   ++ Q +    ++K + R  D   + D  D+ S +++  + +DS +L   + + 
Sbjct: 79  PYAPHEEQLVQLDSAKRNLKQLTRLLDARQIFDAEDSQSEKLKDRAIDDS-LLPTLVAIG 137

Query: 197 DSLHLL-YLVCRPKVTLDT 250
           D+L ++  L  +PK   +T
Sbjct: 138 DNLKIIKELGAKPKFDAET 156


>Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical
           protein R10E12.2 protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 623 QSQHLGGVHHHQMQGQSKRRPETVRRNTFTEN 718
           Q+ H+   HHHQ Q Q    P  +  +T+T +
Sbjct: 313 QNPHMYNSHHHQHQQQQNAHPSEMYHSTYTRD 344


>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 12
           protein.
          Length = 1022

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 273 SNFFPSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGA 401
           S  F SPP  R T T   H  +TY  + +R   +   V   GA
Sbjct: 737 SGKFESPPNRRRTPTIFTHRENTYMYIDSRGPTVRSRVFPLGA 779


>Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical
           protein R02D5.7 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 17  PPEAPLSPEVPQRERLGSMKSVDRSTDGNDVHDGSDNS 130
           PPE P   E P+ +   S KS   S    D  DG D +
Sbjct: 88  PPEKPKKEEKPKEKSKKSAKSKKSSKSKKDKKDGEDEN 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,406
Number of Sequences: 27780
Number of extensions: 405842
Number of successful extensions: 1300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)