Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00858
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50370.1 68416.m05508 expressed protein 31 0.58
At1g61440.1 68414.m06923 S-locus protein kinase, putative contai... 30 1.3
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00... 30 1.8
At2g01700.1 68415.m00098 hypothetical protein 29 3.1
At1g13400.1 68414.m01562 zinc finger (C2H2 type) family protein ... 29 4.1
At4g08013.1 68417.m01283 hypothetical protein low similarity to ... 28 5.4
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c... 28 5.4
At2g09865.1 68415.m01022 hypothetical protein 28 5.4
At1g61460.1 68414.m06925 S-locus protein kinase, putative contai... 28 5.4
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 28 7.2
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR... 28 7.2
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P... 28 7.2
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 28 7.2
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 28 7.2
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 28 7.2
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 27 9.5
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 27 9.5
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr... 27 9.5
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr... 27 9.5
At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative s... 27 9.5
At2g46820.1 68415.m05842 expressed protein 27 9.5
At2g25730.1 68415.m03084 expressed protein 27 9.5
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 27 9.5
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 599 QYASQLK-AQSQHLGG-VHHHQMQGQSKRRPETVRRN 703
Q +SQ K QSQH+GG HHHQ Q RR RN
Sbjct: 2101 QQSSQEKNTQSQHVGGPSHHHQHQHHQNRRSGYHGRN 2137
>At1g61440.1 68414.m06923 S-locus protein kinase, putative contains
similarity to receptor protein kinase [Ipomoea trifida]
gi|836954|gb|AAC23542; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 792
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 532 LYSWKCYT--SPGSKWLQKHTVIISVCFSVKGSKP 630
L SWK YT SPG W+Q + S F ++GS P
Sbjct: 162 LSSWKSYTDPSPGDFWVQITPQVPSQGFVMRGSTP 196
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 527 THYTHG-NVIPHQVQNGSKNTPLLYQYASQLKAQSQHLGGVHHH 655
T Y HG N+ +++ S+N P + Y SQL + H HHH
Sbjct: 220 TPYMHGSNIFAGSIESSSRN-PTSFMYPSQLNPR-DHYYSHHHH 261
>At3g18330.1 68416.m02332 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 376
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 285 PSPPQERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHH 416
P+ P+E + S P+ LS +P N +HND F R H
Sbjct: 4 PNLPKELVEEILSFVPATYLKRLSATCKPWNRLIHNDKRFARKH 47
>At2g01700.1 68415.m00098 hypothetical protein
Length = 104
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 484 GCGKHILVQSS*HNNSLYSWKCYTSPGSKWLQKHTVIISVCFSVKGSKPTLG 639
G K I VQ+ H+N +C+ K K + + C S G PT+G
Sbjct: 2 GSKKQIRVQNISHDNIYSGLRCFVDGSWKGSDKFSGLGWFCRSSNGDSPTMG 53
>At1g13400.1 68414.m01562 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 240
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 306 TTDTFSMHPSHTYPSLSNRQEPINENVHNDGAFYRHHTLT 425
++ + P + YP LS+ N N+ N+G RH TLT
Sbjct: 166 SSSILQLQPPYLYPPLSSPFPQHNTNIGNNGT--RHQTLT 203
>At4g08013.1 68417.m01283 hypothetical protein low similarity to
SCARECROW [Zea mays] GI:10178637
Length = 113
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 17 PPEAPLSPEVPQRERLGSMKSVDRSTDGNDVHDGSDNS 130
PPEAPL+ E + S S+ GN+ +G+ S
Sbjct: 69 PPEAPLNQEQSESPNPNSQAYTHPSSQGNNFQEGAPQS 106
>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 610
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 32 LSPEVPQRERLGSMKSVDRSTDGNDVHDGSDNSSRRMRLTSAEDSK 169
L+P V RL S+ SVDR ++ D +D + +RLT+ E +
Sbjct: 21 LAPIVFVSNRLKSITSVDRGEFIEELSDITDKTEDELRLTAIEQDE 66
>At2g09865.1 68415.m01022 hypothetical protein
Length = 339
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 76 KRRPFYRRQ*CTRRV**LLKTYETYFCGGFQDVDRKNYAHRLSTP 210
K +PF R++ ++RV LL +FC F+ +R+ H + P
Sbjct: 186 KTKPFTRKRKKSKRVGSLLTPIFEHFCISFEGEERQTRHHMIQLP 230
>At1g61460.1 68414.m06925 S-locus protein kinase, putative contains
similarity to KI domain interacting kinase 1 [Zea mays]
gi|2735017|gb|AAB93834; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 598
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 532 LYSWKCYTSP--GSKWLQKHTVIISVCFSVKGSKP 630
L SWK YT+P G LQ T + + +++GSKP
Sbjct: 19 LTSWKSYTNPAVGDFVLQITTQVPTQALTMRGSKP 53
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 263 LRTLMCLG*LLVDIPDIEGVESL 195
LRTL C G LL+D+ +EG+ +L
Sbjct: 662 LRTLYCSGVLLIDLKSLEGMCNL 684
>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 263 LRTLMCLG*LLVDIPDIEGVESL 195
LRTL C G LL+D+ +EG+ +L
Sbjct: 679 LRTLYCSGVLLIDLKSLEGMCNL 701
>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 963
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -3
Query: 264 SPDANVSRVTFGRHTRYRRC---RESVSIIFTVNILESSAEVS--LIRLEELSDPSCTSL 100
SP AN+SR T RY R +++S+ ++L SS S L+ L P+C +
Sbjct: 732 SPIANISRETVDSEKRYNRSLKKLKAISLAGMSSVLTSSTATSFVLMCLIPSLSPNCAAF 791
Query: 99 PSVERSTLFM 70
LF+
Sbjct: 792 TRSSSKLLFL 801
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 520 HNNSLYSWKCYTSPGSKWLQKHTVIISVCFSVKGSKPTLGRC 645
H + W Y PGS W++ + ++ + S+P RC
Sbjct: 754 HMPCMLGWDLYMKPGSSWIRGSKKVYALPNNHHMSRPICPRC 795
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 548 VIPHQVQNGSKNTPLLYQYASQLKAQSQHLGGVHHHQMQGQSK 676
+IPHQ+ P +QY + Q G H + G++K
Sbjct: 59 IIPHQMMYAPPPFPPYHQYPNHHHLHHQSRGNKHQNAFNGENK 101
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 548 VIPHQVQNGSKNTPLLYQYASQLKAQSQHLGGVHHHQMQGQSK 676
+IPHQ+ P +QY + Q G H + G++K
Sbjct: 59 IIPHQMMYAPPPFPPYHQYPNHHHLHHQSRGNKHQNAFNGENK 101
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 520 HNNSLYSWKCYTSPGSKWLQKHTVIISVCFSVKGSKPTLGRC 645
H N L+ + Y PG+ + + ++ V + ++P RC
Sbjct: 532 HRNCLFGFHVYLKPGNTFKYHNRRMVEVLDNKSSTRPVCSRC 573
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 468 LQEHRYNKFYSCILLSVCDGDRKRR 394
LQE +NKFY+ + +C+ D+ +
Sbjct: 552 LQEKAFNKFYTVLASKLCEHDKNHK 576
>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 400
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 285 PSPPQERTTDTFSMHPSHTYPSLSNRQEPINEN 383
P +RTT+ S PS + PSLS+ + I EN
Sbjct: 8 PEKKTKRTTNASSPTPSSSSPSLSSLPDEIVEN 40
>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 400
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 285 PSPPQERTTDTFSMHPSHTYPSLSNRQEPINEN 383
P +RTT+ S PS + PSLS+ + I EN
Sbjct: 8 PEKKTKRTTNASSPTPSSSSPSLSSLPDEIVEN 40
>At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative
similar to phenylalanine ammonia-lyase GB:S48726
[Petroselinum crispum]
Length = 707
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 193 EHNFYGQHLGILRRSKSHTS*GVIR--PVVYIIAVCRTVDAFHAAESL 56
+HN LG++ K+ + +++ Y++A+C+ VD H E+L
Sbjct: 476 QHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAVDLRHLEENL 523
>At2g46820.1 68415.m05842 expressed protein
Length = 174
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 198 SVSIIFTVNILESSAEVSLIRLEELSDPSCTSLPSV 91
S+S+ + I++S A S + S PSC SLP++
Sbjct: 3 SLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTL 38
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 TSCSNFFPSPPQ-ERTTDTFSMHPSHTYPSLSNRQEPINENVHNDGAF 404
+S ++ FPS P +R FS+ S YP+L NR + N+H F
Sbjct: 1180 SSLNDEFPSSPDADRLFYEFSLDQSERYPTL-NRWIQMQTNLHRVSEF 1226
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 596 YQYASQLKA-QSQHLGGVHHHQMQGQSKRRPETVRRNTFTEN 718
Y++ QL+A +SQ +HHHQ Q+ RP+ N N
Sbjct: 137 YRFFDQLEALESQSTTSLHHHQQ--QTPLRPQQNNNNNNNNN 176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,096
Number of Sequences: 28952
Number of extensions: 368319
Number of successful extensions: 1170
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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