Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00856
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.66 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   8.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 212  VPRGSAEGRYRGMQNGLFDFEYTHQCQGTSEASKKQKL 325
            VP+  A G +   +  + D++Y  +C G  + ++K +L
Sbjct: 1230 VPQNCAPGLHYNPEEHMCDWKYKVKCVGRKQLAQKYQL 1267


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 276 YSKSNRPFCIPRYRPSADPR 217
           ++ SN PF I R  P+A+ +
Sbjct: 363 FTSSNHPFSINRLLPTAESK 382


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +3

Query: 75  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 203
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 215 PRGSAEGRYRGMQNGLFDFEYTHQCQGTSEASKKQKLFL 331
           PRGS   R+  +Q+  F ++ T   Q         ++FL
Sbjct: 466 PRGSVFVRFTHLQHQPFTYKITVNNQSNGNRKGTCRIFL 504


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,905
Number of Sequences: 336
Number of extensions: 3403
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)