Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00856
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 70 2e-12
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 65 7e-11
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 64 2e-10
05_01_0103 + 686770-687017,687120-687270 62 5e-10
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 58 8e-09
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 56 2e-08
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 56 3e-08
03_06_0479 + 34217170-34217172,34217337-34217786 54 1e-07
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 44 2e-04
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 38 0.007
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665 30 1.8
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 29 5.4
07_03_0826 - 21774445-21774852,21776047-21776083,21776750-217768... 28 7.1
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 28 7.1
01_01_0481 + 3531859-3532145,3532254-3532749 28 7.1
11_02_0138 - 8708483-8709033,8709163-8709265,8709312-8709359,871... 28 9.4
06_03_0967 - 26395537-26396590,26400918-26401111 28 9.4
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/74 (44%), Positives = 49/74 (66%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 439
+FDF++ T E +K K+F +SW PDT++V+ KMLY+SS D K+ L G+Q +QA
Sbjct: 88 VFDFDFV-----TDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQA 142
Query: 440 TDLSEASQEAVEEK 481
TD SE S + V+ +
Sbjct: 143 TDPSEMSMDIVKSR 156
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 63 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 239
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F L
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLP--- 80
Query: 240 TGECRMA 260
ECR A
Sbjct: 81 ADECRYA 87
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 64.9 bits (151), Expect = 7e-11
Identities = 30/76 (39%), Positives = 50/76 (65%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 439
++DF++ T+E K ++F + W PD AKV+ KMLY+SS + KK L G+Q +QA
Sbjct: 88 IYDFDFL-----TAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQA 142
Query: 440 TDLSEASQEAVEEKLR 487
TD E S +A++++++
Sbjct: 143 TDAGEISLDALKDRVK 158
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 63 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 239
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPE-- 81
Query: 240 TGECRMA 260
G+CR A
Sbjct: 82 -GDCRFA 87
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +2
Query: 296 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 475
T E +K K+F SW PDTA+ + KMLY+SS D ++ L G+Q IQATD SE S + +
Sbjct: 82 TDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIR 141
Query: 476 EK 481
+
Sbjct: 142 AR 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTG 245
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLP---AD 69
Query: 246 ECRMA 260
ECR A
Sbjct: 70 ECRYA 74
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 439
+FD+++ T E +K K+F ++W PDT++V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 62 IFDYDFV-----TEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQA 116
Query: 440 TDLSEASQEAV 472
TD +E + +
Sbjct: 117 TDPTEVGLDVI 127
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 72 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 248
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L E
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLP---ANE 57
Query: 249 CRMA 260
CR A
Sbjct: 58 CRYA 61
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 439
L+DF++ T E +K K+F ++W P T++++ KMLYS+S D +K+ L G IQA
Sbjct: 75 LYDFDFV-----TGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQA 129
Query: 440 TDLSEASQ 463
TD +E Q
Sbjct: 130 TDPTETPQ 137
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 424
+FDF++ T E +K K+F +SW PDT+KV+ KMLY+SS D K+ L G+Q
Sbjct: 333 VFDFDFV-----TDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQ 382
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 63 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 239
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F +
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMP--- 325
Query: 240 TGECRMA 260
ECR A
Sbjct: 326 ASECRYA 332
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 439
++DF++ T E +K K+F ++W P ++++ KMLY++S + ++ L GV IQA
Sbjct: 75 IYDFDFV-----TEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQA 129
Query: 440 TDLSEASQEAVEEK 481
TD SE E + E+
Sbjct: 130 TDPSELDIELLRER 143
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 63 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 239
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L +
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPE-- 68
Query: 240 TGECRMA 260
+CR A
Sbjct: 69 -SDCRYA 74
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 293 GTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAV 472
G + + K+F +SW P A V+ KM+Y+SS + KK L GVQ +QATD SE + + +
Sbjct: 86 GEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVL 145
Query: 473 EE 478
++
Sbjct: 146 KD 147
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 66 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGT 242
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG- 64
Query: 243 GECRMA 260
CR A
Sbjct: 65 --CRYA 68
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 311 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRA 490
+K K+F +SW P ++++ K +Y+ S + + L GV IQATD + E + +
Sbjct: 93 RKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRANR 152
Query: 491 T 493
T
Sbjct: 153 T 153
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 72 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTGE 248
+ V + K+ + E+K+ K HRYV+F I D + +I VE G Y+ F L +
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLP---ADD 76
Query: 249 CRMA 260
CR A
Sbjct: 77 CRYA 80
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 311 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRA 490
+K K+F +SW P + ++ K +Y+ + + L GV IQATD + E + +
Sbjct: 109 RKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRANR 168
Query: 491 T 493
T
Sbjct: 169 T 169
Score = 34.7 bits (76), Expect = 0.082
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 72 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 227
+ V + K+ + E+ + K HRYV+F I D + +I VE G Y+ F L
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL 92
>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
Length = 366
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/54 (42%), Positives = 28/54 (51%)
Frame = -1
Query: 491 WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTS 330
WR +SLRRP LPR R L C S++ + S P+RCP TTTS
Sbjct: 225 WR-SSLRRP---LPR-RHL-CVSDIGIDSASISSFSPAHLRLDHPFRCPATTTS 272
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 741 PPFKPKRITASRQK*AGGGGTYP 673
PP +PKR+ R+K AGG G P
Sbjct: 84 PPPQPKRLQGGRKKGAGGHGKLP 106
>07_03_0826 -
21774445-21774852,21776047-21776083,21776750-21776839,
21777251-21777399
Length = 227
Score = 28.3 bits (60), Expect = 7.1
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Frame = +1
Query: 391 RRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINTFTHELATKPNPLSDTPALTT 570
RR +P R ++ P L S+ RR+ P PI ELA P D
Sbjct: 64 RRYHPIPARYQDLIPRRDALSSLGYARRQMMPFVAPPIGDSEAELALPPMRRRD----AN 119
Query: 571 RGHDTTSRLVLLQRKT------NSINMIDFTGGRTSCESARVGTTAPC 696
R H T R + R T ++ GG AR+G A C
Sbjct: 120 RSHGLT-RAARVDRPTGFDGDCQAMQRRGGVGGVDGVGGARLGGVASC 166
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 99 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 245
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187
>01_01_0481 + 3531859-3532145,3532254-3532749
Length = 260
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 454 SVSGGRRREAPRHRSP----INTFTHELATKPNPLSDTPA 561
+ +G RR EA R R P NTF+H+ T P P + A
Sbjct: 140 AATGHRRGEADRSRPPPPASFNTFSHDDRTTPAPAAHIAA 179
>11_02_0138 -
8708483-8709033,8709163-8709265,8709312-8709359,
8713887-8714359,8716353-8716508,8716572-8716617,
8716657-8716713
Length = 477
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 557 GVSESGFGFVASSCVNVFIGDRW 489
G+ +SG F A SC IG RW
Sbjct: 109 GICQSGMSFRAKSCNRKIIGARW 131
>06_03_0967 - 26395537-26396590,26400918-26401111
Length = 415
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 242 RGMQNGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSF 391
RG +N + D ++T GT S + W +T K KKM SSF
Sbjct: 165 RGHKNAVLDLQWT--TDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSF 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,259,276
Number of Sequences: 37544
Number of extensions: 433341
Number of successful extensions: 1567
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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