Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00856
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 52 4e-07
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 47 2e-05
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 37 0.020
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_11461| Best HMM Match : NHL (HMM E-Value=0) 31 1.3
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61) 30 1.8
SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 30 2.3
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 30 2.3
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/62 (35%), Positives = 40/62 (64%)
Frame = +2
Query: 302 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 481
E + + KL L+ WCPD ++K +M+ +++F +KK G K ++ + SE S EA++E+
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLEIQERSELSFEALKEE 382
Query: 482 LR 487
L+
Sbjct: 383 LK 384
>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +2
Query: 302 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 481
E +++ KL L+ WCPD +K KM+ +++F + K G K ++ D + S EA++EK
Sbjct: 76 EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDRFDLSFEALKEK 135
Query: 482 LR 487
L+
Sbjct: 136 LK 137
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 281 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 454
H+ Q A FL C D A +KKKML S+++ LKK G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298
>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
Length = 151
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 323 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 493
L +SWC D A ++KKM +S+ D ++K + A D + + + K T
Sbjct: 93 LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 66 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 176
SG+ V D + +K K H+Y +F I DE + V
Sbjct: 4 SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVV 40
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +2
Query: 323 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 481
L + WC D A +KK+M+ +++ + LK V V+K Q D ++ + + + +K
Sbjct: 93 LVYIFWCSDNAPIKKRMVSAATNELLKTKFV-VKKVFQINDRADLNYDDIADK 144
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = +3
Query: 66 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 212
SG+ + D Y+ ++ K+K H++ F I D+ K++D T E A ++Q
Sbjct: 4 SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63
Query: 213 FLEDL 227
LE L
Sbjct: 64 MLEKL 68
>SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +1
Query: 454 SVSGGRRREAPRHRSPINTFTH----ELATKPNPLS 549
+ +GGRRRE P R+P+ F E A KP+P++
Sbjct: 45 AAAGGRRREGPTARAPVGGFAEVGNAEFAEKPSPIT 80
>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
Length = 819
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 502 INTFTHELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 642
+ T EL+ T+ NPL TPAL++RG T R+ + + N+ IDF
Sbjct: 292 LENLTQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Frame = +1
Query: 478 EAPRHRSPINTF-THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGG 651
E RH + ++ THE L DT T HDTT L T N + D TG
Sbjct: 502 ETTRHDTHLHDMHTHETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGN 561
Query: 652 RTSCESARVGTTAP 693
T T P
Sbjct: 562 DTQLHDTTGNKTRP 575
>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
Length = 1226
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -1
Query: 491 WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTT 336
W G + R PP RS+ TS L TF ERR W P T+
Sbjct: 855 WGGTAERPPPRQSAPSRSMAITSLLCGSTF-ERRTTVLSMGVVSDWSIPATS 905
>SB_37473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRHRSP--INTFTHELA-TKPNPLSDTPAL 564
P ++V S +P G GR R R++S INT ++E A T+P PL D+P L
Sbjct: 171 PNHWAKVCRSTKPPGPTPRGRGRRGNRNKSKQQINTLSNENASTEPEPL-DSPQL 224
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRHRSP--INTFTHELA-TKPNPLSDTPAL 564
P ++V S +P G GR R R++S INT ++E A T P PL D+P L
Sbjct: 79 PNHWAKVCRSTKPQGPTPRGRGRRGNRNKSKQQINTLSNENASTAPEPL-DSPQL 132
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRHRSP--INTFTHELA-TKPNPLSDTPAL 564
P ++V S +P G GR R R++S INT ++E A T P PL D+P L
Sbjct: 240 PNHWAKVCRSTKPQGPAPRGRGRRGNRNKSKQQINTLSNENASTAPEPL-DSPQL 293
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 409 PCRSSEVHPSDRPLGSVSGGRRREAPRHRSP--INTFTHELA-TKPNPLSDTPAL 564
P ++V S +P G GR R R++S INT ++E A T P PL D+P L
Sbjct: 240 PNHWAKVCRSTKPQGPTPRGRGRRGNRNKSKQQINTLSNENASTAPEPL-DSPQL 293
>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 415 RSSEVHPSDRPLGSVSGGRRREAPRHRSPINTFTHELATKPNPLSDTPALTTR 573
R E+ +R L + +RRE R+ N HE T+ S T A TR
Sbjct: 519 RKDEIEEQNRTLRQLMEEKRREIEGLRAEANQLRHESKTREERESSTIAALTR 571
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = -1
Query: 485 GASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTSGRAS 318
G + R PP R + TS L TF ERR W P T +G AS
Sbjct: 651 GTAERLPPRQSAPSRFMAITSLLCGSTF-ERRTTVLSMGVVSDWSVPATRCAGTAS 705
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,501,570
Number of Sequences: 59808
Number of extensions: 463183
Number of successful extensions: 1598
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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