Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00856
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 58 9e-09
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 58 9e-09
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 53 2e-07
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 53 2e-07
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 51 1e-06
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 30 1.6
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 3.6
Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical pr... 28 6.3
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +3
Query: 60 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 233
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 234 -GGTGECRMA 260
ECR A
Sbjct: 61 VEDGKECRYA 70
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +2
Query: 266 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 439
D E T Q QG S K+ + +CPD A V+++MLY+SS ALK SL G++ +QA
Sbjct: 73 DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131
Query: 440 TDLSEASQEAVEEKLRATDR 499
+++S+ +++V+ L + R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +3
Query: 60 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 233
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 234 -GGTGECRMA 260
ECR A
Sbjct: 61 VEDGKECRYA 70
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +2
Query: 266 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 439
D E T Q QG S K+ + +CPD A V+++MLY+SS ALK SL G++ +QA
Sbjct: 73 DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131
Query: 440 TDLSEASQEAVEEKLRATDR 499
+++S+ +++V+ L + R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 436
+FDF++T G SK K+ + CPD A +KKKM+Y+SS A+K SL G Q
Sbjct: 84 VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142
Query: 437 ATDLSEASQEAVEEKL 484
+D SE S + + KL
Sbjct: 143 VSDESEMSHKELLNKL 158
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 60 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 179
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 436
+FDF++T G SK K+ + CPD A +KKKM+Y+SS A+K SL G Q
Sbjct: 84 VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142
Query: 437 ATDLSEASQEAVEEKL 484
+D SE S + + KL
Sbjct: 143 VSDESEMSHKELLNKL 158
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 60 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 179
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 260 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 436
+FDF++T G SK K+ + CPD A +KKKM+Y+SS A+K SL G Q
Sbjct: 84 VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142
Query: 437 ATDLSEASQE 466
+D SE S +
Sbjct: 143 VSDESEMSHK 152
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +2
Query: 284 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 457
Q SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 458 SQEAVEEKLRATDR 499
+++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 60 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 179
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 218 RGSAEGRYRGMQNGLFDFE-YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 379
R G+Y G + + + H G+ E + +F S PD+ K KKK+LY
Sbjct: 141 RPKVNGKYEGAEEYPDELAVFIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 457 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 359
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 287 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 466
C+ S+ + L+ +CP+ + + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 467 AVEEK 481
+E K
Sbjct: 133 LLESK 137
>Z73428-2|CAA97806.2| 572|Caenorhabditis elegans Hypothetical
protein M142.2 protein.
Length = 572
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 512 NVFIGDRWRGASLRRPPETLPRGRSLGCT 426
NVF+ D + R PE P RS+G T
Sbjct: 252 NVFVMDHYHDEECRAGPEKFPDSRSIGLT 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,663
Number of Sequences: 27780
Number of extensions: 332607
Number of successful extensions: 1163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -