Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00855
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 34 0.11
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 33 0.25
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 33 0.25
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 31 1.0
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 31 1.0
03_01_0168 + 1382531-1383931,1384028-1384150 31 1.0
11_03_0047 - 9311913-9312659 30 2.3
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 30 2.3
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 29 3.1
02_05_0513 - 29682657-29682956 29 3.1
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 28 7.1
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 28 7.1
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 9.4
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 28 9.4
09_02_0468 - 9608922-9610061 28 9.4
07_03_0705 - 20846810-20848165 28 9.4
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 28 9.4
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 28 9.4
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 34.3 bits (75), Expect = 0.11
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -1
Query: 596 PATTIPAFSQIKSTSLTVVPQQASIAAS--TDHRSRLTALPGPTARNFTASSRRNSSSQP 423
P +P S+I + L +V +A + TD SRL LP + +SS+ ++ S P
Sbjct: 624 PVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKITKK--SSSKGSAGSMP 681
Query: 422 TTGSSTLGVTHLRRGSS 372
GSS L V+ GSS
Sbjct: 682 KQGSSDLIVSDNGGGSS 698
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 33.1 bits (72), Expect = 0.25
Identities = 26/82 (31%), Positives = 36/82 (43%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSS 432
SAS +PA A S + + P A+ A+ + L T + ++SS R S
Sbjct: 41 SASSSPAPAPAAASTLLLPPRLLAPPPAAAASHGGCDTGANILASTTTPSPSSSSHRRSM 100
Query: 431 SQPTTGSSTLGVTHLRRGSSAH 366
S T S L T RRG SA+
Sbjct: 101 SARFTASLVLPFTRPRRGRSAN 122
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 33.1 bits (72), Expect = 0.25
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Frame = -2
Query: 541 SHSKPASQPQQTIAADSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSHISGVAALHTW 362
SHS + P+ A++S ++H+ SLP SP HQR H V +
Sbjct: 878 SHSTDSVPPKDANASNSQAMCQIKHSGSLP--------SPGSPHQRSDLHHDEVQGGRSG 929
Query: 361 TTGDTHAAFKLSLDSPQTSSSTGDTHAAFKLSLDSPSFEQHWP---LQANLSTD 209
+ H + S PQTSSS + S S QH P LQA D
Sbjct: 930 EWNNQHNSELWSPSMPQTSSSAHSNVESHHDHYPSWSQVQHDPKNSLQAGSGKD 983
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = -2
Query: 595 RLPQSPHSRR*KARH*QSSHSKPASQPQQTIAADSPRFLVLRHATSLPHHAATVHRSPRP 416
RLP+SP R +R QS+H+ A P+Q + + R A A SP P
Sbjct: 92 RLPESPPRPRVASRR-QSTHAPTAPSPRQPGRLPAHLTVASRAAQPASRLRAPARASPSP 150
Query: 415 DHQRLG 398
D Q G
Sbjct: 151 DAQTPG 156
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 530 ASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQPT 420
A + ++ + + A+PGPT+RN NSSS P+
Sbjct: 498 AVVPSAAGETAAIPAIPGPTSRNVPMEENSNSSSIPS 534
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 455 ASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHAR 342
A +RRN SS P+ ++ G+ H+ G +A + W+ R
Sbjct: 65 AGNRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>11_03_0047 - 9311913-9312659
Length = 248
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -1
Query: 503 RSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSAHMDYWRHARSIQAQS 324
R ++ P P T+SS +S S PTTGS G+ H + A+M A + Q+
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH--KSLRANM-----AAPVAEQA 96
Query: 323 RLTAD 309
R+ AD
Sbjct: 97 RVLAD 101
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -1
Query: 557 TSLTVVPQQASIA---ASTDHRSRLTALPGPTARNFTASS-RRNSSSQPTTGSSTLGVTH 390
TS + V A+ A ASTDHR ++ L TAR F+ S+ RR+ ++ SS + H
Sbjct: 321 TSRSTVRASAAAAPGRASTDHRDQVKTLEIDTARPFSYSTPRRHGNASYHASSSPMHRAH 380
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 641 ITSGSPM*RVI-FRYQPTNSRYVQESNPNGVRPQA 742
+++G PM V + QPTN+RYV+E+ GVR +A
Sbjct: 383 VSAGVPMVAVAQWSDQPTNARYVEEAWRVGVRARA 417
>02_05_0513 - 29682657-29682956
Length = 99
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 388 RCVTPSVDDPVVGCDELLRRDEAVKLRAVGPGSAVSRLRWSV 513
RC T +DPV G + RRD +K RA+ P +LRWS+
Sbjct: 44 RCGTRVAEDPVGGEACIGRRDGWIKGRALLPEKI--KLRWSI 83
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 210 SVLRLACKGQCCSKLGESRLSLNAACVSPVLLEVCGESRLSLNAACVSPVVHVCRAA 380
+V L + CSKL ESR L + S ++L+ + + + A S + ++ R++
Sbjct: 371 AVTILLALAELCSKLEESRSQLMSVQASTLILDALKHASVDIRVAACSCLKNISRSS 427
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 547 QSSHSKPASQPQQTIAADSPRFLVLRHATSLPHHAATVHRSPRPDHQRLGSHISGVAA 374
Q SH +P P+Q +V +H P++A+ H H G H GVA+
Sbjct: 275 QGSHQRPRFTPEQQ--GGPTTMIVQQHR---PYNASNFHPGSSGSHHGQGQHNRGVAS 327
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 622 DSSSAHQELRLPQSPHSRR*KARH*QSSHSKPASQPQQTIAADSPRFLVLRHATSLPH 449
D+ Q R+P+SP R K R + H K S P+ + + + R RH +S H
Sbjct: 133 DTKGDRQSQRVPKSPLLTREKERKHKDEHRK--SYPKDSHSKEQSRRSPSRHHSSQDH 188
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 157 RVAIIRRKIIDRCLNLAYDIFKIKRIHTSSEQQHSDRRSTEQYHPLGGR 11
RV +R+ ++ + LA + K+K I TSS+ H ++T++ G+
Sbjct: 338 RVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGK 386
>09_02_0468 - 9608922-9610061
Length = 379
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 502 AADSPRFLVLRHATSLPHHAATVHRSPRPDHQR 404
+ DSPR+ R S+P T+ RSPR +R
Sbjct: 77 SVDSPRWRGARRRPSVPDMELTLSRSPRAGEER 109
>07_03_0705 - 20846810-20848165
Length = 451
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 510 RPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWG--HTSPAWQLCTHGLLATRTQH 337
RP+ P AS S ++L C + QF+ + NA G + P T G LAT T H
Sbjct: 127 RPAPPFQPASSSTFSKLPCASSLCQFLTSPYLTCNATGCVYYYPYGMGFTAGYLATETLH 186
Query: 336 SSSVS 322
S
Sbjct: 187 VGGAS 191
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 27.9 bits (59), Expect = 9.4
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = -1
Query: 569 QIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTH 390
Q K T P +S T SR+ + G + RN+SSQ + + G
Sbjct: 556 QKKITGFQFAPGSSSEVLITSADSRIRVVNGDELVH-KFKGFRNTSSQISASVAPNGKYV 614
Query: 389 LRRGSSAHMDYWRHAR-SIQAQSRLTADFEQHWRH 288
+ +H+ WRH S ++SR D + H
Sbjct: 615 VCASEDSHVYVWRHDNTSHPSRSRSAVDVTNSYEH 649
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 27.9 bits (59), Expect = 9.4
Identities = 24/112 (21%), Positives = 40/112 (35%)
Frame = -2
Query: 463 TSLPHHAATVHRSPRPDHQRLGSHISGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTH 284
TS PHH V R P+ H H W + A D + +
Sbjct: 40 TSAPHHQQYVQRQPQQHHHH-NHHQQHQQQQQQWLRRNQIAREAAGTDRNSEPKAVAQSP 98
Query: 283 AAFKLSLDSPSFEQHWPLQANLSTDNAN*K*HDLQSRRGVMWRVAIIRRKII 128
A +DS S Q W Q L + + D+ + +G + ++R+++
Sbjct: 99 AVD--GIDSSS--QDWKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELL 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,515,784
Number of Sequences: 37544
Number of extensions: 505900
Number of successful extensions: 1912
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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