Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00855
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 36 0.042
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 36 0.042
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 36 0.042
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 34 0.13
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 34 0.13
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 33 0.17
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z82288-7|CAB05326.1| 390|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 30 2.1
AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical ... 30 2.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 2.7
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 2.7
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 29 4.8
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 6.3
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 28 8.4
U46676-1|AAY86202.1| 184|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC024790-14|ABA61861.1| 417|Caenorhabditis elegans Hypothetical... 28 8.4
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 35.5 bits (78), Expect = 0.042
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQAS-IAASTDHRSRLTALPGPTARNFTASSRRNS 435
SAS + + T+ S +++TVVP +S A+ST S ++ PG T SS
Sbjct: 132 SASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIAS--SSSPGSTVTVAPGSSSTYG 189
Query: 434 SSQPTTGSSTLGVTHLRRGSS 372
SS P+ SS+ G GS+
Sbjct: 190 SSTPSASSSSSGTMSTNSGST 210
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/98 (23%), Positives = 45/98 (45%)
Frame = -1
Query: 665 ATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTA 486
+T +PT +TF + T +T+P+ S + + S P +S++ ST S LT+
Sbjct: 437 STASSPTGSTGSTF--SVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTS 494
Query: 485 LPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSS 372
P P++ + + ++ P ST + G++
Sbjct: 495 EPSPSSTQSSGAQSTLTTPSPNPSQSTSSLESSTSGAT 532
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVP-QQASIAASTDHRS-----RLTALPGPTARNFT-- 456
SAS + A T S ++ T+VP +S+ +ST S ++ + GPT T
Sbjct: 256 SASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 315
Query: 455 ----ASSRRNSSSQPTTGSSTLGVTHLRRGSSA 369
S +SS P++ ++ G T GSS+
Sbjct: 316 PGSSTSPAPSSSPNPSSSPASTGSTITISGSSS 348
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 35.5 bits (78), Expect = 0.042
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQAS-IAASTDHRSRLTALPGPTARNFTASSRRNS 435
SAS + + T+ S +++TVVP +S A+ST S ++ PG T SS
Sbjct: 339 SASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIAS--SSSPGSTVTVAPGSSSTYG 396
Query: 434 SSQPTTGSSTLGVTHLRRGSS 372
SS P+ SS+ G GS+
Sbjct: 397 SSTPSASSSSSGTMSTNSGST 417
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/98 (23%), Positives = 45/98 (45%)
Frame = -1
Query: 665 ATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTA 486
+T +PT +TF + T +T+P+ S + + S P +S++ ST S LT+
Sbjct: 644 STASSPTGSTGSTF--SVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTS 701
Query: 485 LPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSS 372
P P++ + + ++ P ST + G++
Sbjct: 702 EPSPSSTQSSGAQSTLTTPSPNPSQSTSSLESSTSGAT 739
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVP-QQASIAASTDHRS-----RLTALPGPTARNFT-- 456
SAS + A T S ++ T+VP +S+ +ST S ++ + GPT T
Sbjct: 463 SASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 522
Query: 455 ----ASSRRNSSSQPTTGSSTLGVTHLRRGSSA 369
S +SS P++ ++ G T GSS+
Sbjct: 523 PGSSTSPAPSSSPNPSSSPASTGSTITISGSSS 555
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 35.5 bits (78), Expect = 0.042
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQAS-IAASTDHRSRLTALPGPTARNFTASSRRNS 435
SAS + + T+ S +++TVVP +S A+ST S ++ PG T SS
Sbjct: 339 SASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIAS--SSSPGSTVTVAPGSSSTYG 396
Query: 434 SSQPTTGSSTLGVTHLRRGSS 372
SS P+ SS+ G GS+
Sbjct: 397 SSTPSASSSSSGTMSTNSGST 417
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/98 (23%), Positives = 45/98 (45%)
Frame = -1
Query: 665 ATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTA 486
+T +PT +TF + T +T+P+ S + + S P +S++ ST S LT+
Sbjct: 644 STASSPTGSTGSTF--SVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTS 701
Query: 485 LPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSS 372
P P++ + + ++ P ST + G++
Sbjct: 702 EPSPSSTQSSGAQSTLTTPSPNPSQSTSSLESSTSGAT 739
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSS 432
++S P++T S T + + Q ++ A++T H L + + S+ + SS
Sbjct: 1760 ASSTAPSSTGTMSSTSSGTVGSTMSQSSTAASTTSHTGSTVTLGSSSTSSNQMSTSQGSS 1819
Query: 431 SQPTTGSSTLGV 396
T SST G+
Sbjct: 1820 VGSTVASSTAGL 1831
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVP-QQASIAASTDHRS-----RLTALPGPTARNFT-- 456
SAS + A T S ++ T+VP +S+ +ST S ++ + GPT T
Sbjct: 463 SASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVV 522
Query: 455 ----ASSRRNSSSQPTTGSSTLGVTHLRRGSSA 369
S +SS P++ ++ G T GSS+
Sbjct: 523 PGSSTSPAPSSSPNPSSSPASTGSTITISGSSS 555
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = -1
Query: 668 PATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLT 489
P T T T +T I +++ +TT+P +T +T VP + + ST S T
Sbjct: 245 PTTPTTTTIASTSTVTSIVTSTTVTSTTVPT-----TTVVTTVPTTTATSTSTSTASTTT 299
Query: 488 ALPGPTARNFTASSRRNSSSQPTTGSST 405
P + T + N++S T+ +++
Sbjct: 300 TTPSTSTHTTTVTYSTNATSSTTSPTTS 327
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 653 TPT*CEHATF*FIFSASRTPAT---TIPAFSQIKSTS-LTVVPQQASIAAST-DHRSRLT 489
TP+ E ++ + +RT T T P + I STS +T + ++ ++T + +T
Sbjct: 221 TPSSTEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVT 280
Query: 488 ALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSA 369
+P TA + + S+ +++ P+T + T VT+ +S+
Sbjct: 281 TVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSS 320
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = -1
Query: 668 PATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLT 489
P T T T +T I +++ +TT+P +T +T VP + + ST S T
Sbjct: 227 PTTPTTTTIASTSTVTSIVTSTTVTSTTVPT-----TTVVTTVPTTTATSTSTSTASTTT 281
Query: 488 ALPGPTARNFTASSRRNSSSQPTTGSST 405
P + T + N++S T+ +++
Sbjct: 282 TTPSTSTHTTTVTYSTNATSSTTSPTTS 309
Score = 31.1 bits (67), Expect = 0.90
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = -1
Query: 653 TPT*CEHATF*FIFSASRTPAT---TIPAFSQIKSTS-LTVVPQQASIAAST-DHRSRLT 489
TP+ E ++ + +RT T T P + I STS +T + ++ ++T + +T
Sbjct: 203 TPSSTEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVT 262
Query: 488 ALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSA 369
+P TA + + S+ +++ P+T + T VT+ +S+
Sbjct: 263 TVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSS 302
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -1
Query: 605 SRTPATTIPAFSQIKSTSLTVVPQQASIA-ASTDHRSRLTALPGPTARNFTASSRRNSSS 429
++ +TT P S + T P +S + ST ++ + P A + + +S+ +SS+
Sbjct: 679 TQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQGSSSA 738
Query: 428 QPTTGSSTLGVT 393
QP SST+G T
Sbjct: 739 QPIASSSTMGST 750
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 590 TTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTA-SSRRNSSSQPTTG 414
TT P S + S Q ++ST + ++ P PTA + + SS +SS T G
Sbjct: 720 TTQPPASSRSTASQGSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVG 779
Query: 413 SSTLGVTHLRRGSS 372
SST+G T SS
Sbjct: 780 SSTMGSTQSSLPSS 793
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -1
Query: 599 TPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQPT 420
T TT P + T+ T P + +T + T PT T ++ +++ PT
Sbjct: 176 TTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPT 235
Query: 419 TGSST 405
T ++T
Sbjct: 236 TTTTT 240
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/69 (23%), Positives = 27/69 (39%)
Frame = -1
Query: 599 TPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQPT 420
T TT P + T+ T P + +T T PT T ++ +++ PT
Sbjct: 183 TTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPT 242
Query: 419 TGSSTLGVT 393
T ++ T
Sbjct: 243 TTTTPATTT 251
>Z82288-7|CAB05326.1| 390|Caenorhabditis elegans Hypothetical
protein ZK896.9 protein.
Length = 390
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 617 IFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRL 492
+ S++ P TT+ FS + +T+LT V AS+A+S S L
Sbjct: 173 VLSSTLAPTTTVSPFSNL-TTTLTTVVTTASLASSKTENSVL 213
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Frame = -1
Query: 668 PATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLT 489
P T+ + T T + TT P + STS T + A+T + T
Sbjct: 154 PTTIPSTTTSSTTTTTTTTTTEEPTTTTSPIATTTTSTSTTTTETPTTSEATTHEPTAST 213
Query: 488 ALPGPTARN--FTASSRRNSSSQPTTGSST 405
LP P A N + +N S+ +G +T
Sbjct: 214 ELPPPDAPNDYIDSEEAQNISASQESGETT 243
>AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2b protein.
Length = 634
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Frame = -1
Query: 668 PATLVTPT*CEHATF*FIFSASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLT 489
P T+ + T T + TT P + STS T + A+T + T
Sbjct: 104 PTTIPSTTTSSTTTTTTTTTTEEPTTTTSPIATTTTSTSTTTTETPTTSEATTHEPTAST 163
Query: 488 ALPGPTARN--FTASSRRNSSSQPTTGSST 405
LP P A N + +N S+ +G +T
Sbjct: 164 ELPPPDAPNDYIDSEEAQNISASQESGETT 193
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 611 SASRTPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSS 432
S+S +TI +Q TS + P S + T +S +TA P T TAS +S
Sbjct: 474 SSSTVVTSTITPSTQGVPTSTSNQPTP-STSNPTTPKSTVTASPSTTGATSTASPSTITS 532
Query: 431 SQPTTGS 411
S PT+ S
Sbjct: 533 SAPTSQS 539
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = -1
Query: 599 TPATTIPAFSQIKSTSLTVVPQQASIAASTDHRSRL-TALPGPTARNFTASSRR---NSS 432
T T P+ S I ST+ IA+S+ S ++ P PT + + S +S
Sbjct: 1468 TTVTVPPSSSSIGSTAPQGSSSIQPIASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSG 1527
Query: 431 SQPTTGSSTLGVTHLRRGSS 372
S T GSST+G T SS
Sbjct: 1528 SSTTVGSSTVGATQTSVSSS 1547
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = -1
Query: 605 SRTPATTIPAFSQIKSTS----LTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRN 438
+R+ +TI S+I+ TS L V AS ST S ++ PT + + ++
Sbjct: 847 TRSTTSTIFTSSEIRPTSSITILGVESTTASSTGSTTSESTTSSTEPPTTQEESNTTTTL 906
Query: 437 SSSQPTTGSSTLGVT 393
SS+ P T SST T
Sbjct: 907 SSTTPFTTSSTESFT 921
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/47 (21%), Positives = 20/47 (42%)
Frame = +3
Query: 228 CKGQCCSKLGESRLSLNAACVSPVLLEVCGESRLSLNAACVSPVVHV 368
C QC + S S N C CG+ + +++ +P++ +
Sbjct: 204 CVSQCAEQCSGSNTSNNQQCQQQCQSNTCGQYQSTVSTTTTTPIIQI 250
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 599 TPATTIPAF-SQIKSTSLTVVPQQASIAASTDHRSRLTALPGPTARNFTASSRRNSSSQP 423
T TTIP+ S STS T + ST + T+ P T T + +++S P
Sbjct: 268 TTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTTTP--STTSTP 325
Query: 422 TTGSST 405
TT S+T
Sbjct: 326 TTTSTT 331
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -1
Query: 590 TTIPAFSQIKSTSLTVVPQQASIA-----ASTDHRSRLTALPGPTARNFTASSRRNSSSQ 426
TTI ++ STS T +P+ AS AST+H A T + +++
Sbjct: 298 TTITGTRKLSSTSTTKLPKTASKTSTARLASTEHSEAAGAPATATPFDLPTKPSTSTTKL 357
Query: 425 PTTGSST 405
P+T S+T
Sbjct: 358 PSTASTT 364
>U46676-1|AAY86202.1| 184|Caenorhabditis elegans Hypothetical
protein F23G4.1 protein.
Length = 184
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 250 FEQHWPLQANLSTDNAN*K*HDLQSRRGVMWRVAIIRRKIIDRCLNLAYDIF 95
F HW + + N K HDL RG+M V I ++ I DR Y +F
Sbjct: 30 FTDHW-----VDVEVKNPKGHDLYLHRGLMQWVCINQKDISDRNCIAKYPLF 76
>AC024790-14|ABA61861.1| 417|Caenorhabditis elegans Hypothetical
protein Y47D7A.16 protein.
Length = 417
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 92 LENVVSEIQASVNYLASYDGYPPHHSPPRLKVVSFLI 202
+ +++S IQ + NY D PH+ PPR V F +
Sbjct: 153 IPSLLSLIQGTSNYWCD-DNKTPHYYPPRFSVSMFFL 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,353
Number of Sequences: 27780
Number of extensions: 407432
Number of successful extensions: 1610
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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